Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
ZNF541Q9H0D2 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
ZNF541Q9H0D2 WIZP1-201ENST00000531444 2299 ntBASIC20.39■□□□□ 0.85
ZNF541Q9H0D2 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC20.38■□□□□ 0.85
ZNF541Q9H0D2 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
ZNF541Q9H0D2 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
ZNF541Q9H0D2 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC20.38■□□□□ 0.85
ZNF541Q9H0D2 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC20.38■□□□□ 0.85
ZNF541Q9H0D2 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC20.38■□□□□ 0.85
ZNF541Q9H0D2 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC20.38■□□□□ 0.85
ZNF541Q9H0D2 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC20.38■□□□□ 0.85
ZNF541Q9H0D2 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
ZNF541Q9H0D2 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC20.38■□□□□ 0.85
ZNF541Q9H0D2 ACA64.2-201ENST00000459014 129 ntBASIC20.38■□□□□ 0.85
ZNF541Q9H0D2 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC20.38■□□□□ 0.85
ZNF541Q9H0D2 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC20.38■□□□□ 0.85
ZNF541Q9H0D2 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
ZNF541Q9H0D2 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
ZNF541Q9H0D2 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
ZNF541Q9H0D2 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC20.38■□□□□ 0.85
ZNF541Q9H0D2 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
ZNF541Q9H0D2 AC087289.5-201ENST00000586076 3175 ntBASIC20.38■□□□□ 0.85
ZNF541Q9H0D2 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
ZNF541Q9H0D2 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC20.38■□□□□ 0.85
ZNF541Q9H0D2 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
ZNF541Q9H0D2 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC20.37■□□□□ 0.85
ZNF541Q9H0D2 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
ZNF541Q9H0D2 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC20.37■□□□□ 0.85
ZNF541Q9H0D2 PODN-203ENST00000395871 2744 ntTSL 5 BASIC20.37■□□□□ 0.85
ZNF541Q9H0D2 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
ZNF541Q9H0D2 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
ZNF541Q9H0D2 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
ZNF541Q9H0D2 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC20.37■□□□□ 0.85
ZNF541Q9H0D2 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
ZNF541Q9H0D2 POLE2-203ENST00000553805 496 ntTSL 2 BASIC20.37■□□□□ 0.85
ZNF541Q9H0D2 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC20.37■□□□□ 0.85
ZNF541Q9H0D2 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC20.37■□□□□ 0.85
ZNF541Q9H0D2 AC132938.2-201ENST00000579188 680 ntBASIC20.37■□□□□ 0.85
ZNF541Q9H0D2 MIR3909-201ENST00000579518 119 ntBASIC20.37■□□□□ 0.85
ZNF541Q9H0D2 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC20.37■□□□□ 0.85
ZNF541Q9H0D2 WT1-AS_2.1-201ENST00000613208 137 ntBASIC20.37■□□□□ 0.85
ZNF541Q9H0D2 TEX28P1-201ENST00000613479 1221 ntBASIC20.37■□□□□ 0.85
ZNF541Q9H0D2 TEX28P2-201ENST00000617764 1221 ntBASIC20.37■□□□□ 0.85
ZNF541Q9H0D2 AL591163.1-201ENST00000641757 987 ntBASIC20.37■□□□□ 0.85
ZNF541Q9H0D2 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
ZNF541Q9H0D2 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
ZNF541Q9H0D2 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC20.37■□□□□ 0.85
ZNF541Q9H0D2 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC20.37■□□□□ 0.85
ZNF541Q9H0D2 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC20.37■□□□□ 0.85
ZNF541Q9H0D2 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
ZNF541Q9H0D2 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
ZNF541Q9H0D2 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC20.37■□□□□ 0.85
ZNF541Q9H0D2 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC20.37■□□□□ 0.85
ZNF541Q9H0D2 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
ZNF541Q9H0D2 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
ZNF541Q9H0D2 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
ZNF541Q9H0D2 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC20.37■□□□□ 0.85
ZNF541Q9H0D2 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
ZNF541Q9H0D2 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
ZNF541Q9H0D2 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC20.37■□□□□ 0.85
ZNF541Q9H0D2 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
ZNF541Q9H0D2 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
ZNF541Q9H0D2 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
ZNF541Q9H0D2 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
ZNF541Q9H0D2 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
ZNF541Q9H0D2 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
ZNF541Q9H0D2 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
ZNF541Q9H0D2 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
ZNF541Q9H0D2 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
ZNF541Q9H0D2 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
ZNF541Q9H0D2 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC20.36■□□□□ 0.85
ZNF541Q9H0D2 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
ZNF541Q9H0D2 AC098614.1-201ENST00000368528 745 ntBASIC20.36■□□□□ 0.85
ZNF541Q9H0D2 MXI1-205ENST00000393134 889 ntTSL 2 BASIC20.36■□□□□ 0.85
ZNF541Q9H0D2 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
ZNF541Q9H0D2 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
ZNF541Q9H0D2 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC20.36■□□□□ 0.85
ZNF541Q9H0D2 WASH4P-201ENST00000564273 1246 ntBASIC20.36■□□□□ 0.85
ZNF541Q9H0D2 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC20.36■□□□□ 0.85
ZNF541Q9H0D2 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC20.36■□□□□ 0.85
ZNF541Q9H0D2 RNA5-8SN1-201ENST00000610460 153 ntBASIC20.36■□□□□ 0.85
ZNF541Q9H0D2 RNA5-8SN5-202ENST00000612463 153 ntBASIC20.36■□□□□ 0.85
ZNF541Q9H0D2 RNA5-8SN4-201ENST00000613359 153 ntBASIC20.36■□□□□ 0.85
ZNF541Q9H0D2 RNA5-8SN5-201ENST00000619471 153 ntBASIC20.36■□□□□ 0.85
ZNF541Q9H0D2 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC20.36■□□□□ 0.85
ZNF541Q9H0D2 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
ZNF541Q9H0D2 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
ZNF541Q9H0D2 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC20.36■□□□□ 0.85
ZNF541Q9H0D2 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
ZNF541Q9H0D2 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
ZNF541Q9H0D2 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC20.36■□□□□ 0.85
ZNF541Q9H0D2 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC20.36■□□□□ 0.85
ZNF541Q9H0D2 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC20.36■□□□□ 0.85
ZNF541Q9H0D2 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
ZNF541Q9H0D2 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
ZNF541Q9H0D2 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
ZNF541Q9H0D2 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
ZNF541Q9H0D2 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
ZNF541Q9H0D2 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
ZNF541Q9H0D2 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms