Protein–RNA interactions for Protein: Q9BXA9

SALL3, Sal-like protein 3, humanhuman

Predictions only

Length 1,300 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SALL3Q9BXA9 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SALL3Q9BXA9 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC20.82■□□□□ 0.92
SALL3Q9BXA9 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC20.82■□□□□ 0.92
SALL3Q9BXA9 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SALL3Q9BXA9 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC20.82■□□□□ 0.92
SALL3Q9BXA9 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC20.82■□□□□ 0.92
SALL3Q9BXA9 IGHV3-65-201ENST00000523210 341 ntBASIC20.82■□□□□ 0.92
SALL3Q9BXA9 AC105339.3-201ENST00000560043 636 ntBASIC20.82■□□□□ 0.92
SALL3Q9BXA9 AL356488.2-201ENST00000602755 427 ntBASIC20.82■□□□□ 0.92
SALL3Q9BXA9 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC20.82■□□□□ 0.92
SALL3Q9BXA9 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC20.82■□□□□ 0.92
SALL3Q9BXA9 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC20.82■□□□□ 0.92
SALL3Q9BXA9 AC084018.2-201ENST00000613093 2607 ntBASIC20.82■□□□□ 0.92
SALL3Q9BXA9 CA12-203ENST00000422263 2556 ntTSL 2 BASIC20.82■□□□□ 0.92
SALL3Q9BXA9 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC20.82■□□□□ 0.92
SALL3Q9BXA9 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC20.82■□□□□ 0.92
SALL3Q9BXA9 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SALL3Q9BXA9 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC20.82■□□□□ 0.92
SALL3Q9BXA9 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SALL3Q9BXA9 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC20.82■□□□□ 0.92
SALL3Q9BXA9 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC20.82■□□□□ 0.92
SALL3Q9BXA9 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC20.82■□□□□ 0.92
SALL3Q9BXA9 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SALL3Q9BXA9 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC20.82■□□□□ 0.92
SALL3Q9BXA9 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC20.82■□□□□ 0.92
SALL3Q9BXA9 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
SALL3Q9BXA9 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC20.82■□□□□ 0.92
SALL3Q9BXA9 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC20.82■□□□□ 0.92
SALL3Q9BXA9 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC20.82■□□□□ 0.92
SALL3Q9BXA9 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC20.82■□□□□ 0.92
SALL3Q9BXA9 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SALL3Q9BXA9 AL603756.1-201ENST00000606511 2163 ntBASIC20.81■□□□□ 0.92
SALL3Q9BXA9 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
SALL3Q9BXA9 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SALL3Q9BXA9 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SALL3Q9BXA9 AF186996.4-201ENST00000467186 377 ntBASIC20.81■□□□□ 0.92
SALL3Q9BXA9 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC20.81■□□□□ 0.92
SALL3Q9BXA9 RPS29-206ENST00000557111 488 ntTSL 2 BASIC20.81■□□□□ 0.92
SALL3Q9BXA9 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC20.81■□□□□ 0.92
SALL3Q9BXA9 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SALL3Q9BXA9 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC20.81■□□□□ 0.92
SALL3Q9BXA9 AC117500.6-201ENST00000624871 588 ntBASIC20.81■□□□□ 0.92
SALL3Q9BXA9 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
SALL3Q9BXA9 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC20.81■□□□□ 0.92
SALL3Q9BXA9 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SALL3Q9BXA9 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC20.81■□□□□ 0.92
SALL3Q9BXA9 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SALL3Q9BXA9 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SALL3Q9BXA9 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC20.81■□□□□ 0.92
SALL3Q9BXA9 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SALL3Q9BXA9 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
SALL3Q9BXA9 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
SALL3Q9BXA9 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC20.81■□□□□ 0.92
SALL3Q9BXA9 AMT-206ENST00000458307 1860 ntTSL 2 BASIC20.81■□□□□ 0.92
SALL3Q9BXA9 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC20.81■□□□□ 0.92
SALL3Q9BXA9 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SALL3Q9BXA9 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
SALL3Q9BXA9 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SALL3Q9BXA9 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SALL3Q9BXA9 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
SALL3Q9BXA9 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC20.81■□□□□ 0.92
SALL3Q9BXA9 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC20.8■□□□□ 0.92
SALL3Q9BXA9 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC20.8■□□□□ 0.92
SALL3Q9BXA9 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SALL3Q9BXA9 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC20.8■□□□□ 0.92
SALL3Q9BXA9 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SALL3Q9BXA9 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC20.8■□□□□ 0.92
SALL3Q9BXA9 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
SALL3Q9BXA9 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC20.8■□□□□ 0.92
SALL3Q9BXA9 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC20.8■□□□□ 0.92
SALL3Q9BXA9 AC013467.2-201ENST00000605472 835 ntBASIC20.8■□□□□ 0.92
SALL3Q9BXA9 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC20.8■□□□□ 0.92
SALL3Q9BXA9 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SALL3Q9BXA9 AL773604.1-201ENST00000617417 272 ntBASIC20.8■□□□□ 0.92
SALL3Q9BXA9 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC20.8■□□□□ 0.92
SALL3Q9BXA9 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SALL3Q9BXA9 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
SALL3Q9BXA9 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC20.8■□□□□ 0.92
SALL3Q9BXA9 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SALL3Q9BXA9 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC20.8■□□□□ 0.92
SALL3Q9BXA9 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC20.8■□□□□ 0.92
SALL3Q9BXA9 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
SALL3Q9BXA9 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SALL3Q9BXA9 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SALL3Q9BXA9 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SALL3Q9BXA9 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
SALL3Q9BXA9 TOP3BP1-201ENST00000420768 1380 ntBASIC20.8■□□□□ 0.92
SALL3Q9BXA9 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SALL3Q9BXA9 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC20.8■□□□□ 0.92
SALL3Q9BXA9 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SALL3Q9BXA9 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC20.8■□□□□ 0.92
SALL3Q9BXA9 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SALL3Q9BXA9 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SALL3Q9BXA9 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC20.8■□□□□ 0.92
SALL3Q9BXA9 PC-204ENST00000524491 1714 ntTSL 2 BASIC20.8■□□□□ 0.92
SALL3Q9BXA9 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SALL3Q9BXA9 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
SALL3Q9BXA9 AL031284.1-201ENST00000419297 478 ntBASIC20.79■□□□□ 0.92
SALL3Q9BXA9 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC20.79■□□□□ 0.92
SALL3Q9BXA9 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC20.79■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms