Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PTCHD1Q96NR3 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
PTCHD1Q96NR3 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
PTCHD1Q96NR3 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
PTCHD1Q96NR3 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC16.26■□□□□ 0.19
PTCHD1Q96NR3 AC243591.1-201ENST00000452967 1364 ntBASIC16.26■□□□□ 0.19
PTCHD1Q96NR3 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PTCHD1Q96NR3 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PTCHD1Q96NR3 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PTCHD1Q96NR3 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PTCHD1Q96NR3 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
PTCHD1Q96NR3 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PTCHD1Q96NR3 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PTCHD1Q96NR3 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC16.25■□□□□ 0.19
PTCHD1Q96NR3 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
PTCHD1Q96NR3 AP002414.3-201ENST00000589352 1468 ntBASIC16.25■□□□□ 0.19
PTCHD1Q96NR3 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC16.25■□□□□ 0.19
PTCHD1Q96NR3 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PTCHD1Q96NR3 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PTCHD1Q96NR3 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC16.25■□□□□ 0.19
PTCHD1Q96NR3 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PTCHD1Q96NR3 ACTG1P4-201ENST00000425123 1122 ntBASIC16.25■□□□□ 0.19
PTCHD1Q96NR3 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC16.25■□□□□ 0.19
PTCHD1Q96NR3 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PTCHD1Q96NR3 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC16.25■□□□□ 0.19
PTCHD1Q96NR3 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC16.25■□□□□ 0.19
PTCHD1Q96NR3 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC16.25■□□□□ 0.19
PTCHD1Q96NR3 CYGB-205ENST00000590175 830 ntTSL 3 BASIC16.25■□□□□ 0.19
PTCHD1Q96NR3 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PTCHD1Q96NR3 AL139424.1-201ENST00000607572 797 ntBASIC16.25■□□□□ 0.19
PTCHD1Q96NR3 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PTCHD1Q96NR3 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC16.25■□□□□ 0.19
PTCHD1Q96NR3 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC16.25■□□□□ 0.19
PTCHD1Q96NR3 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
PTCHD1Q96NR3 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PTCHD1Q96NR3 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
PTCHD1Q96NR3 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PTCHD1Q96NR3 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
PTCHD1Q96NR3 BANP-227ENST00000626016 2144 ntTSL 2 BASIC16.25■□□□□ 0.19
PTCHD1Q96NR3 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
PTCHD1Q96NR3 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PTCHD1Q96NR3 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PTCHD1Q96NR3 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC16.25■□□□□ 0.19
PTCHD1Q96NR3 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PTCHD1Q96NR3 AC108860.2-201ENST00000562760 2183 ntBASIC16.24■□□□□ 0.19
PTCHD1Q96NR3 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC16.24■□□□□ 0.19
PTCHD1Q96NR3 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PTCHD1Q96NR3 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PTCHD1Q96NR3 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC16.24■□□□□ 0.19
PTCHD1Q96NR3 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
PTCHD1Q96NR3 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
PTCHD1Q96NR3 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PTCHD1Q96NR3 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC16.24■□□□□ 0.19
PTCHD1Q96NR3 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PTCHD1Q96NR3 CENPM-204ENST00000402420 688 ntTSL 5 BASIC16.24■□□□□ 0.19
PTCHD1Q96NR3 ARTN-206ENST00000472435 402 ntTSL 3 BASIC16.24■□□□□ 0.19
PTCHD1Q96NR3 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC16.24■□□□□ 0.19
PTCHD1Q96NR3 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC16.24■□□□□ 0.19
PTCHD1Q96NR3 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC16.24■□□□□ 0.19
PTCHD1Q96NR3 AC120114.3-201ENST00000611923 658 ntBASIC16.24■□□□□ 0.19
PTCHD1Q96NR3 BX640515.1-201ENST00000617215 977 ntBASIC16.24■□□□□ 0.19
PTCHD1Q96NR3 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PTCHD1Q96NR3 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PTCHD1Q96NR3 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
PTCHD1Q96NR3 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PTCHD1Q96NR3 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
PTCHD1Q96NR3 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC16.24■□□□□ 0.19
PTCHD1Q96NR3 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PTCHD1Q96NR3 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
PTCHD1Q96NR3 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC16.24■□□□□ 0.19
PTCHD1Q96NR3 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
PTCHD1Q96NR3 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PTCHD1Q96NR3 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
PTCHD1Q96NR3 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
PTCHD1Q96NR3 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTCHD1Q96NR3 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
PTCHD1Q96NR3 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTCHD1Q96NR3 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTCHD1Q96NR3 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PTCHD1Q96NR3 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTCHD1Q96NR3 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC16.23■□□□□ 0.19
PTCHD1Q96NR3 IL9RP2-201ENST00000423948 1312 ntBASIC16.23■□□□□ 0.19
PTCHD1Q96NR3 TPR-209ENST00000613151 2478 ntTSL 5 BASIC16.23■□□□□ 0.19
PTCHD1Q96NR3 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PTCHD1Q96NR3 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
PTCHD1Q96NR3 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC16.23■□□□□ 0.19
PTCHD1Q96NR3 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PTCHD1Q96NR3 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PTCHD1Q96NR3 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC16.23■□□□□ 0.19
PTCHD1Q96NR3 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC16.23■□□□□ 0.19
PTCHD1Q96NR3 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC16.23■□□□□ 0.19
PTCHD1Q96NR3 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC16.23■□□□□ 0.19
PTCHD1Q96NR3 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PTCHD1Q96NR3 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC16.23■□□□□ 0.19
PTCHD1Q96NR3 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC16.23■□□□□ 0.19
PTCHD1Q96NR3 RPS29-206ENST00000557111 488 ntTSL 2 BASIC16.23■□□□□ 0.19
PTCHD1Q96NR3 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC16.23■□□□□ 0.19
PTCHD1Q96NR3 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC16.23■□□□□ 0.19
PTCHD1Q96NR3 AL356488.2-201ENST00000602755 427 ntBASIC16.23■□□□□ 0.19
PTCHD1Q96NR3 AL353135.1-201ENST00000606729 504 ntBASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 140.1 ms