Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHMP4CQ96CF2 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CHMP4CQ96CF2 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CHMP4CQ96CF2 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC20.53■□□□□ 0.88
CHMP4CQ96CF2 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC20.53■□□□□ 0.88
CHMP4CQ96CF2 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CHMP4CQ96CF2 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC20.53■□□□□ 0.88
CHMP4CQ96CF2 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CHMP4CQ96CF2 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CHMP4CQ96CF2 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC20.53■□□□□ 0.88
CHMP4CQ96CF2 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC20.53■□□□□ 0.88
CHMP4CQ96CF2 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC20.53■□□□□ 0.88
CHMP4CQ96CF2 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CHMP4CQ96CF2 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
CHMP4CQ96CF2 CTNS-203ENST00000399306 803 ntTSL 3 BASIC20.53■□□□□ 0.88
CHMP4CQ96CF2 SRP19-202ENST00000445150 833 ntTSL 2 BASIC20.53■□□□□ 0.88
CHMP4CQ96CF2 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CHMP4CQ96CF2 OR7E14P-202ENST00000530490 1290 ntBASIC20.53■□□□□ 0.88
CHMP4CQ96CF2 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC20.53■□□□□ 0.88
CHMP4CQ96CF2 RNF151-202ENST00000569210 853 ntTSL 2 BASIC20.53■□□□□ 0.88
CHMP4CQ96CF2 LITAF-211ENST00000572255 516 ntTSL 4 BASIC20.53■□□□□ 0.88
CHMP4CQ96CF2 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
CHMP4CQ96CF2 COPE-211ENST00000600932 1144 ntTSL 5 BASIC20.53■□□□□ 0.88
CHMP4CQ96CF2 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC20.53■□□□□ 0.88
CHMP4CQ96CF2 AC019129.2-201ENST00000609837 1235 ntBASIC20.53■□□□□ 0.88
CHMP4CQ96CF2 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC20.53■□□□□ 0.88
CHMP4CQ96CF2 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CHMP4CQ96CF2 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC20.53■□□□□ 0.88
CHMP4CQ96CF2 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CHMP4CQ96CF2 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
CHMP4CQ96CF2 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CHMP4CQ96CF2 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC20.53■□□□□ 0.88
CHMP4CQ96CF2 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
CHMP4CQ96CF2 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CHMP4CQ96CF2 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CHMP4CQ96CF2 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CHMP4CQ96CF2 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC20.53■□□□□ 0.88
CHMP4CQ96CF2 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC20.53■□□□□ 0.88
CHMP4CQ96CF2 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CHMP4CQ96CF2 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CHMP4CQ96CF2 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CHMP4CQ96CF2 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
CHMP4CQ96CF2 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC20.52■□□□□ 0.88
CHMP4CQ96CF2 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC20.52■□□□□ 0.88
CHMP4CQ96CF2 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CHMP4CQ96CF2 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
CHMP4CQ96CF2 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CHMP4CQ96CF2 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC20.52■□□□□ 0.88
CHMP4CQ96CF2 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC20.52■□□□□ 0.88
CHMP4CQ96CF2 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
CHMP4CQ96CF2 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CHMP4CQ96CF2 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC20.52■□□□□ 0.88
CHMP4CQ96CF2 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC20.52■□□□□ 0.88
CHMP4CQ96CF2 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CHMP4CQ96CF2 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
CHMP4CQ96CF2 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC20.52■□□□□ 0.88
CHMP4CQ96CF2 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC20.52■□□□□ 0.88
CHMP4CQ96CF2 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC20.52■□□□□ 0.88
CHMP4CQ96CF2 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC20.52■□□□□ 0.88
CHMP4CQ96CF2 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
CHMP4CQ96CF2 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC20.52■□□□□ 0.88
CHMP4CQ96CF2 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC20.52■□□□□ 0.88
CHMP4CQ96CF2 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CHMP4CQ96CF2 SDCCAG3P1-201ENST00000589292 1150 ntBASIC20.52■□□□□ 0.88
CHMP4CQ96CF2 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
CHMP4CQ96CF2 BANP-227ENST00000626016 2144 ntTSL 2 BASIC20.52■□□□□ 0.88
CHMP4CQ96CF2 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CHMP4CQ96CF2 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
CHMP4CQ96CF2 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC20.52■□□□□ 0.87
CHMP4CQ96CF2 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CHMP4CQ96CF2 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC20.51■□□□□ 0.87
CHMP4CQ96CF2 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC20.51■□□□□ 0.87
CHMP4CQ96CF2 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
CHMP4CQ96CF2 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CHMP4CQ96CF2 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CHMP4CQ96CF2 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CHMP4CQ96CF2 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CHMP4CQ96CF2 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CHMP4CQ96CF2 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC20.51■□□□□ 0.87
CHMP4CQ96CF2 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC20.51■□□□□ 0.87
CHMP4CQ96CF2 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
CHMP4CQ96CF2 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC20.51■□□□□ 0.87
CHMP4CQ96CF2 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC20.51■□□□□ 0.87
CHMP4CQ96CF2 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
CHMP4CQ96CF2 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CHMP4CQ96CF2 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
CHMP4CQ96CF2 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC20.51■□□□□ 0.87
CHMP4CQ96CF2 AC079776.2-201ENST00000641154 1609 ntBASIC20.51■□□□□ 0.87
CHMP4CQ96CF2 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC20.51■□□□□ 0.87
CHMP4CQ96CF2 FUT8-AS1-201ENST00000621019 1521 ntBASIC20.51■□□□□ 0.87
CHMP4CQ96CF2 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CHMP4CQ96CF2 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC20.51■□□□□ 0.87
CHMP4CQ96CF2 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CHMP4CQ96CF2 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CHMP4CQ96CF2 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CHMP4CQ96CF2 AC116353.5-201ENST00000638148 1699 ntBASIC20.51■□□□□ 0.87
CHMP4CQ96CF2 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
CHMP4CQ96CF2 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
CHMP4CQ96CF2 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
CHMP4CQ96CF2 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms