Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC16.71■□□□□ 0.27
LMX1AQ8TE12 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LMX1AQ8TE12 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LMX1AQ8TE12 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC16.71■□□□□ 0.27
LMX1AQ8TE12 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LMX1AQ8TE12 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
LMX1AQ8TE12 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC16.71■□□□□ 0.27
LMX1AQ8TE12 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC16.71■□□□□ 0.27
LMX1AQ8TE12 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
LMX1AQ8TE12 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
LMX1AQ8TE12 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
LMX1AQ8TE12 AL645939.2-201ENST00000427340 991 ntBASIC16.71■□□□□ 0.27
LMX1AQ8TE12 SLC25A6P5-201ENST00000435663 894 ntBASIC16.71■□□□□ 0.27
LMX1AQ8TE12 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC16.71■□□□□ 0.27
LMX1AQ8TE12 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC16.71■□□□□ 0.27
LMX1AQ8TE12 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC16.71■□□□□ 0.27
LMX1AQ8TE12 RFPL4AP1-201ENST00000530883 850 ntBASIC16.71■□□□□ 0.27
LMX1AQ8TE12 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC16.71■□□□□ 0.27
LMX1AQ8TE12 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
LMX1AQ8TE12 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC16.71■□□□□ 0.27
LMX1AQ8TE12 METTL23-205ENST00000588302 925 ntTSL 5 BASIC16.71■□□□□ 0.27
LMX1AQ8TE12 AC004835.2-201ENST00000603762 682 ntBASIC16.71■□□□□ 0.27
LMX1AQ8TE12 AC106028.4-201ENST00000614509 607 ntBASIC16.71■□□□□ 0.27
LMX1AQ8TE12 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC16.71■□□□□ 0.27
LMX1AQ8TE12 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LMX1AQ8TE12 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
LMX1AQ8TE12 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC16.71■□□□□ 0.27
LMX1AQ8TE12 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LMX1AQ8TE12 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
LMX1AQ8TE12 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LMX1AQ8TE12 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
LMX1AQ8TE12 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC16.7■□□□□ 0.26
LMX1AQ8TE12 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC16.7■□□□□ 0.26
LMX1AQ8TE12 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC16.7■□□□□ 0.26
LMX1AQ8TE12 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
LMX1AQ8TE12 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC16.7■□□□□ 0.26
LMX1AQ8TE12 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
LMX1AQ8TE12 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LMX1AQ8TE12 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
LMX1AQ8TE12 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC16.7■□□□□ 0.26
LMX1AQ8TE12 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LMX1AQ8TE12 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LMX1AQ8TE12 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
LMX1AQ8TE12 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC16.7■□□□□ 0.26
LMX1AQ8TE12 HNRNPRP1-201ENST00000453465 1695 ntBASIC16.7■□□□□ 0.26
LMX1AQ8TE12 AC133963.1-201ENST00000504166 1679 ntBASIC16.7■□□□□ 0.26
LMX1AQ8TE12 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
LMX1AQ8TE12 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC16.7■□□□□ 0.26
LMX1AQ8TE12 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
LMX1AQ8TE12 STOM-202ENST00000347359 870 ntTSL 2 BASIC16.7■□□□□ 0.26
LMX1AQ8TE12 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LMX1AQ8TE12 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
LMX1AQ8TE12 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
LMX1AQ8TE12 TSEN15P1-201ENST00000423257 515 ntBASIC16.7■□□□□ 0.26
LMX1AQ8TE12 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
LMX1AQ8TE12 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC16.7■□□□□ 0.26
LMX1AQ8TE12 CYMP-203ENST00000474680 1263 ntBASIC16.7■□□□□ 0.26
LMX1AQ8TE12 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC16.7■□□□□ 0.26
LMX1AQ8TE12 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC16.7■□□□□ 0.26
LMX1AQ8TE12 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC16.7■□□□□ 0.26
LMX1AQ8TE12 AC105339.1-204ENST00000636249 355 ntBASIC16.7■□□□□ 0.26
LMX1AQ8TE12 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LMX1AQ8TE12 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LMX1AQ8TE12 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC16.7■□□□□ 0.26
LMX1AQ8TE12 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
LMX1AQ8TE12 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
LMX1AQ8TE12 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
LMX1AQ8TE12 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LMX1AQ8TE12 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC16.7■□□□□ 0.26
LMX1AQ8TE12 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
LMX1AQ8TE12 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LMX1AQ8TE12 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
LMX1AQ8TE12 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
LMX1AQ8TE12 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LMX1AQ8TE12 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.69■□□□□ 0.26
LMX1AQ8TE12 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC16.69■□□□□ 0.26
LMX1AQ8TE12 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC16.69■□□□□ 0.26
LMX1AQ8TE12 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC16.69■□□□□ 0.26
LMX1AQ8TE12 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC16.69■□□□□ 0.26
LMX1AQ8TE12 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC16.69■□□□□ 0.26
LMX1AQ8TE12 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LMX1AQ8TE12 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LMX1AQ8TE12 AC002056.1-201ENST00000395613 760 ntBASIC16.69■□□□□ 0.26
LMX1AQ8TE12 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC16.69■□□□□ 0.26
LMX1AQ8TE12 AC004461.1-201ENST00000412461 403 ntBASIC16.69■□□□□ 0.26
LMX1AQ8TE12 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC16.69■□□□□ 0.26
LMX1AQ8TE12 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
LMX1AQ8TE12 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
LMX1AQ8TE12 RPL28-209ENST00000560055 670 ntTSL 3 BASIC16.69■□□□□ 0.26
LMX1AQ8TE12 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC16.69■□□□□ 0.26
LMX1AQ8TE12 AL513210.1-201ENST00000629608 234 ntBASIC16.69■□□□□ 0.26
LMX1AQ8TE12 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
LMX1AQ8TE12 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LMX1AQ8TE12 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
LMX1AQ8TE12 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC16.69■□□□□ 0.26
LMX1AQ8TE12 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
LMX1AQ8TE12 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
LMX1AQ8TE12 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC16.69■□□□□ 0.26
LMX1AQ8TE12 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC16.69■□□□□ 0.26
LMX1AQ8TE12 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 70.1 ms