Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
KRT39Q6A163 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
KRT39Q6A163 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC18.59■□□□□ 0.57
KRT39Q6A163 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
KRT39Q6A163 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
KRT39Q6A163 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
KRT39Q6A163 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
KRT39Q6A163 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC18.58■□□□□ 0.57
KRT39Q6A163 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
KRT39Q6A163 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
KRT39Q6A163 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
KRT39Q6A163 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
KRT39Q6A163 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
KRT39Q6A163 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC18.58■□□□□ 0.57
KRT39Q6A163 AL590787.1-201ENST00000568856 1315 ntBASIC18.58■□□□□ 0.57
KRT39Q6A163 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
KRT39Q6A163 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC18.58■□□□□ 0.57
KRT39Q6A163 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
KRT39Q6A163 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
KRT39Q6A163 RAB17-203ENST00000409576 466 ntTSL 3 BASIC18.58■□□□□ 0.56
KRT39Q6A163 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
KRT39Q6A163 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC18.58■□□□□ 0.56
KRT39Q6A163 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
KRT39Q6A163 AL139424.1-201ENST00000607572 797 ntBASIC18.58■□□□□ 0.56
KRT39Q6A163 IRF5-214ENST00000613821 595 ntTSL 5 BASIC18.58■□□□□ 0.56
KRT39Q6A163 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC18.58■□□□□ 0.56
KRT39Q6A163 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
KRT39Q6A163 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
KRT39Q6A163 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
KRT39Q6A163 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC18.58■□□□□ 0.56
KRT39Q6A163 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
KRT39Q6A163 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
KRT39Q6A163 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
KRT39Q6A163 FRMD8P1-201ENST00000440433 1524 ntBASIC18.58■□□□□ 0.56
KRT39Q6A163 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
KRT39Q6A163 PKD1P1-201ENST00000458669 6805 ntBASIC18.58■□□□□ 0.56
KRT39Q6A163 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
KRT39Q6A163 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
KRT39Q6A163 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC18.58■□□□□ 0.56
KRT39Q6A163 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
KRT39Q6A163 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
KRT39Q6A163 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
KRT39Q6A163 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC18.57■□□□□ 0.56
KRT39Q6A163 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC18.57■□□□□ 0.56
KRT39Q6A163 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
KRT39Q6A163 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
KRT39Q6A163 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
KRT39Q6A163 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC18.57■□□□□ 0.56
KRT39Q6A163 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
KRT39Q6A163 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
KRT39Q6A163 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
KRT39Q6A163 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
KRT39Q6A163 AC004870.1-201ENST00000315132 882 ntBASIC18.57■□□□□ 0.56
KRT39Q6A163 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
KRT39Q6A163 NABP1-203ENST00000409510 843 ntTSL 5 BASIC18.57■□□□□ 0.56
KRT39Q6A163 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC18.57■□□□□ 0.56
KRT39Q6A163 PNMT-203ENST00000581428 677 ntTSL 2 BASIC18.57■□□□□ 0.56
KRT39Q6A163 AC004706.3-202ENST00000621574 984 ntBASIC18.57■□□□□ 0.56
KRT39Q6A163 AL691432.3-201ENST00000621860 400 ntBASIC18.57■□□□□ 0.56
KRT39Q6A163 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
KRT39Q6A163 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
KRT39Q6A163 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC18.57■□□□□ 0.56
KRT39Q6A163 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
KRT39Q6A163 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
KRT39Q6A163 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
KRT39Q6A163 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
KRT39Q6A163 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
KRT39Q6A163 PRORSD1P-202ENST00000563365 2154 ntBASIC18.57■□□□□ 0.56
KRT39Q6A163 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
KRT39Q6A163 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
KRT39Q6A163 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
KRT39Q6A163 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
KRT39Q6A163 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
KRT39Q6A163 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
KRT39Q6A163 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
KRT39Q6A163 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC18.56■□□□□ 0.56
KRT39Q6A163 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
KRT39Q6A163 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
KRT39Q6A163 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC18.56■□□□□ 0.56
KRT39Q6A163 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
KRT39Q6A163 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
KRT39Q6A163 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC18.56■□□□□ 0.56
KRT39Q6A163 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
KRT39Q6A163 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
KRT39Q6A163 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC18.56■□□□□ 0.56
KRT39Q6A163 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC18.56■□□□□ 0.56
KRT39Q6A163 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC18.56■□□□□ 0.56
KRT39Q6A163 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
KRT39Q6A163 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC18.56■□□□□ 0.56
KRT39Q6A163 AC073648.2-201ENST00000510116 352 ntBASIC18.56■□□□□ 0.56
KRT39Q6A163 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
KRT39Q6A163 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC18.56■□□□□ 0.56
KRT39Q6A163 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC18.56■□□□□ 0.56
KRT39Q6A163 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC18.56■□□□□ 0.56
KRT39Q6A163 SDCCAG3P1-201ENST00000589292 1150 ntBASIC18.56■□□□□ 0.56
KRT39Q6A163 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
KRT39Q6A163 TP73-AS1-207ENST00000624167 988 ntBASIC18.56■□□□□ 0.56
KRT39Q6A163 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
KRT39Q6A163 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
KRT39Q6A163 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms