Protein–RNA interactions for Protein: Q68DV7

RNF43, E3 ubiquitin-protein ligase RNF43, humanhuman

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43Q68DV7 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RNF43Q68DV7 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
RNF43Q68DV7 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
RNF43Q68DV7 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC18.09■□□□□ 0.49
RNF43Q68DV7 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC18.09■□□□□ 0.49
RNF43Q68DV7 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC18.09■□□□□ 0.49
RNF43Q68DV7 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
RNF43Q68DV7 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
RNF43Q68DV7 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC18.09■□□□□ 0.49
RNF43Q68DV7 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC18.09■□□□□ 0.49
RNF43Q68DV7 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RNF43Q68DV7 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
RNF43Q68DV7 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
RNF43Q68DV7 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC18.09■□□□□ 0.49
RNF43Q68DV7 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC18.09■□□□□ 0.49
RNF43Q68DV7 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
RNF43Q68DV7 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC18.08■□□□□ 0.49
RNF43Q68DV7 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC18.08■□□□□ 0.49
RNF43Q68DV7 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
RNF43Q68DV7 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC18.08■□□□□ 0.49
RNF43Q68DV7 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
RNF43Q68DV7 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC18.08■□□□□ 0.49
RNF43Q68DV7 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC18.08■□□□□ 0.49
RNF43Q68DV7 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.49
RNF43Q68DV7 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
RNF43Q68DV7 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC18.08■□□□□ 0.49
RNF43Q68DV7 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC18.08■□□□□ 0.49
RNF43Q68DV7 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.49
RNF43Q68DV7 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
RNF43Q68DV7 AC132938.5-201ENST00000624980 1813 ntBASIC18.08■□□□□ 0.48
RNF43Q68DV7 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
RNF43Q68DV7 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
RNF43Q68DV7 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
RNF43Q68DV7 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
RNF43Q68DV7 HNRNPA1P28-201ENST00000424481 961 ntBASIC18.08■□□□□ 0.48
RNF43Q68DV7 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.48
RNF43Q68DV7 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
RNF43Q68DV7 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
RNF43Q68DV7 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC18.08■□□□□ 0.48
RNF43Q68DV7 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC18.08■□□□□ 0.48
RNF43Q68DV7 AC027796.2-201ENST00000575326 344 ntBASIC18.08■□□□□ 0.48
RNF43Q68DV7 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC18.08■□□□□ 0.48
RNF43Q68DV7 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
RNF43Q68DV7 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC18.08■□□□□ 0.48
RNF43Q68DV7 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
RNF43Q68DV7 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
RNF43Q68DV7 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
RNF43Q68DV7 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
RNF43Q68DV7 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
RNF43Q68DV7 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
RNF43Q68DV7 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
RNF43Q68DV7 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
RNF43Q68DV7 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
RNF43Q68DV7 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
RNF43Q68DV7 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
RNF43Q68DV7 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RNF43Q68DV7 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC18.07■□□□□ 0.48
RNF43Q68DV7 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RNF43Q68DV7 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC18.07■□□□□ 0.48
RNF43Q68DV7 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
RNF43Q68DV7 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC18.07■□□□□ 0.48
RNF43Q68DV7 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RNF43Q68DV7 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RNF43Q68DV7 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
RNF43Q68DV7 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
RNF43Q68DV7 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
RNF43Q68DV7 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
RNF43Q68DV7 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC18.07■□□□□ 0.48
RNF43Q68DV7 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RNF43Q68DV7 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RNF43Q68DV7 UPF3AP3-201ENST00000420996 769 ntBASIC18.07■□□□□ 0.48
RNF43Q68DV7 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC18.07■□□□□ 0.48
RNF43Q68DV7 AC002558.1-201ENST00000488906 803 ntBASIC18.07■□□□□ 0.48
RNF43Q68DV7 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC18.07■□□□□ 0.48
RNF43Q68DV7 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC18.07■□□□□ 0.48
RNF43Q68DV7 PNMT-203ENST00000581428 677 ntTSL 2 BASIC18.07■□□□□ 0.48
RNF43Q68DV7 TMED1-207ENST00000591695 809 ntTSL 5 BASIC18.07■□□□□ 0.48
RNF43Q68DV7 AC027601.4-201ENST00000611259 610 ntBASIC18.07■□□□□ 0.48
RNF43Q68DV7 AC116407.3-201ENST00000623905 1129 ntBASIC18.07■□□□□ 0.48
RNF43Q68DV7 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RNF43Q68DV7 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC18.07■□□□□ 0.48
RNF43Q68DV7 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RNF43Q68DV7 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC18.07■□□□□ 0.48
RNF43Q68DV7 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
RNF43Q68DV7 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
RNF43Q68DV7 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
RNF43Q68DV7 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
RNF43Q68DV7 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
RNF43Q68DV7 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC18.07■□□□□ 0.48
RNF43Q68DV7 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
RNF43Q68DV7 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
RNF43Q68DV7 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC18.07■□□□□ 0.48
RNF43Q68DV7 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RNF43Q68DV7 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RNF43Q68DV7 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
RNF43Q68DV7 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC18.06■□□□□ 0.48
RNF43Q68DV7 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
RNF43Q68DV7 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
RNF43Q68DV7 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
RNF43Q68DV7 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms