Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC20.85■□□□□ 0.93
CCDC88AQ3V6T2 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC20.85■□□□□ 0.93
CCDC88AQ3V6T2 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC20.85■□□□□ 0.93
CCDC88AQ3V6T2 AL355312.1-201ENST00000407115 2176 ntBASIC20.85■□□□□ 0.93
CCDC88AQ3V6T2 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC88AQ3V6T2 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC20.85■□□□□ 0.93
CCDC88AQ3V6T2 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC88AQ3V6T2 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC20.85■□□□□ 0.93
CCDC88AQ3V6T2 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC20.85■□□□□ 0.93
CCDC88AQ3V6T2 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC88AQ3V6T2 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC88AQ3V6T2 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC20.85■□□□□ 0.93
CCDC88AQ3V6T2 SLC25A6P5-201ENST00000435663 894 ntBASIC20.85■□□□□ 0.93
CCDC88AQ3V6T2 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC20.85■□□□□ 0.93
CCDC88AQ3V6T2 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
CCDC88AQ3V6T2 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
CCDC88AQ3V6T2 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC20.85■□□□□ 0.93
CCDC88AQ3V6T2 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC20.85■□□□□ 0.93
CCDC88AQ3V6T2 AC017083.2-201ENST00000608069 979 ntBASIC20.85■□□□□ 0.93
CCDC88AQ3V6T2 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC20.85■□□□□ 0.93
CCDC88AQ3V6T2 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
CCDC88AQ3V6T2 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC88AQ3V6T2 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC88AQ3V6T2 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC20.85■□□□□ 0.93
CCDC88AQ3V6T2 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
CCDC88AQ3V6T2 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC20.85■□□□□ 0.93
CCDC88AQ3V6T2 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
CCDC88AQ3V6T2 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC88AQ3V6T2 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC88AQ3V6T2 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC20.84■□□□□ 0.93
CCDC88AQ3V6T2 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC88AQ3V6T2 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC20.84■□□□□ 0.93
CCDC88AQ3V6T2 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC20.84■□□□□ 0.93
CCDC88AQ3V6T2 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC88AQ3V6T2 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC20.84■□□□□ 0.93
CCDC88AQ3V6T2 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC88AQ3V6T2 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC88AQ3V6T2 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC20.84■□□□□ 0.93
CCDC88AQ3V6T2 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
CCDC88AQ3V6T2 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC20.84■□□□□ 0.93
CCDC88AQ3V6T2 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC88AQ3V6T2 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
CCDC88AQ3V6T2 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC88AQ3V6T2 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC88AQ3V6T2 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC88AQ3V6T2 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
CCDC88AQ3V6T2 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC88AQ3V6T2 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC88AQ3V6T2 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC20.84■□□□□ 0.93
CCDC88AQ3V6T2 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
CCDC88AQ3V6T2 TMPRSS11CP-201ENST00000453277 683 ntBASIC20.84■□□□□ 0.93
CCDC88AQ3V6T2 GIMAP3P-201ENST00000495150 836 ntBASIC20.84■□□□□ 0.93
CCDC88AQ3V6T2 CDK4-206ENST00000549606 558 ntTSL 2 BASIC20.84■□□□□ 0.93
CCDC88AQ3V6T2 AC132938.2-201ENST00000579188 680 ntBASIC20.84■□□□□ 0.93
CCDC88AQ3V6T2 AC073592.8-201ENST00000624126 511 ntBASIC20.84■□□□□ 0.93
CCDC88AQ3V6T2 AL591163.1-201ENST00000641757 987 ntBASIC20.84■□□□□ 0.93
CCDC88AQ3V6T2 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC88AQ3V6T2 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC20.83■□□□□ 0.93
CCDC88AQ3V6T2 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC88AQ3V6T2 AC008764.6-201ENST00000595909 2069 ntBASIC20.83■□□□□ 0.93
CCDC88AQ3V6T2 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC88AQ3V6T2 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC88AQ3V6T2 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC88AQ3V6T2 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC88AQ3V6T2 HMGA1P7-201ENST00000406908 502 ntBASIC20.83■□□□□ 0.92
CCDC88AQ3V6T2 LINC01225-203ENST00000563550 1244 ntBASIC20.83■□□□□ 0.92
CCDC88AQ3V6T2 AP000842.3-202ENST00000569238 1080 ntBASIC20.83■□□□□ 0.92
CCDC88AQ3V6T2 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC88AQ3V6T2 AL138828.2-201ENST00000615812 383 ntBASIC20.83■□□□□ 0.92
CCDC88AQ3V6T2 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC88AQ3V6T2 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC20.83■□□□□ 0.92
CCDC88AQ3V6T2 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC88AQ3V6T2 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC88AQ3V6T2 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC88AQ3V6T2 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC88AQ3V6T2 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC88AQ3V6T2 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC88AQ3V6T2 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC88AQ3V6T2 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC20.82■□□□□ 0.92
CCDC88AQ3V6T2 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC20.82■□□□□ 0.92
CCDC88AQ3V6T2 AC027369.6-201ENST00000525520 931 ntBASIC20.82■□□□□ 0.92
CCDC88AQ3V6T2 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
CCDC88AQ3V6T2 MIR4515-201ENST00000584082 81 ntBASIC20.82■□□□□ 0.92
CCDC88AQ3V6T2 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC88AQ3V6T2 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC20.82■□□□□ 0.92
CCDC88AQ3V6T2 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC20.82■□□□□ 0.92
CCDC88AQ3V6T2 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC88AQ3V6T2 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC20.82■□□□□ 0.92
CCDC88AQ3V6T2 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC88AQ3V6T2 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC20.82■□□□□ 0.92
CCDC88AQ3V6T2 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
CCDC88AQ3V6T2 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC20.82■□□□□ 0.92
CCDC88AQ3V6T2 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC88AQ3V6T2 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
CCDC88AQ3V6T2 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC20.82■□□□□ 0.92
CCDC88AQ3V6T2 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC20.82■□□□□ 0.92
CCDC88AQ3V6T2 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC88AQ3V6T2 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC88AQ3V6T2 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC88AQ3V6T2 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 61.4 ms