Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC14.77□□□□□ -0.04
ABCA4P78363 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
ABCA4P78363 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
ABCA4P78363 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
ABCA4P78363 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
ABCA4P78363 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.04
ABCA4P78363 THTPA-204ENST00000554970 569 ntTSL 4 BASIC14.77□□□□□ -0.04
ABCA4P78363 THTPA-206ENST00000556015 535 ntTSL 3 BASIC14.77□□□□□ -0.04
ABCA4P78363 AC051619.7-201ENST00000568314 623 ntBASIC14.77□□□□□ -0.04
ABCA4P78363 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC14.77□□□□□ -0.04
ABCA4P78363 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
ABCA4P78363 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC14.77□□□□□ -0.04
ABCA4P78363 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
ABCA4P78363 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC14.77□□□□□ -0.04
ABCA4P78363 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
ABCA4P78363 AKAP8P1-201ENST00000434743 1349 ntBASIC14.77□□□□□ -0.04
ABCA4P78363 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC14.77□□□□□ -0.04
ABCA4P78363 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
ABCA4P78363 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
ABCA4P78363 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC14.77□□□□□ -0.04
ABCA4P78363 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
ABCA4P78363 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC14.77□□□□□ -0.05
ABCA4P78363 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC14.77□□□□□ -0.05
ABCA4P78363 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
ABCA4P78363 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC14.77□□□□□ -0.05
ABCA4P78363 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
ABCA4P78363 RPL30-202ENST00000396070 440 ntTSL 2 BASIC14.77□□□□□ -0.05
ABCA4P78363 PMS2P4-201ENST00000412466 1052 ntBASIC14.77□□□□□ -0.05
ABCA4P78363 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC14.77□□□□□ -0.05
ABCA4P78363 LINC00982-205ENST00000420957 435 ntBASIC14.77□□□□□ -0.05
ABCA4P78363 FAM58DP-201ENST00000428076 619 ntBASIC14.77□□□□□ -0.05
ABCA4P78363 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC14.77□□□□□ -0.05
ABCA4P78363 SPDYE11-202ENST00000450699 704 ntBASIC14.77□□□□□ -0.05
ABCA4P78363 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC14.77□□□□□ -0.05
ABCA4P78363 AQP6-203ENST00000551733 849 ntTSL 3 BASIC14.77□□□□□ -0.05
ABCA4P78363 LINC00304-203ENST00000565008 1864 ntBASIC14.77□□□□□ -0.05
ABCA4P78363 SPDYE9P-201ENST00000570642 692 ntBASIC14.77□□□□□ -0.05
ABCA4P78363 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
ABCA4P78363 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC14.77□□□□□ -0.05
ABCA4P78363 SPDYE10P-202ENST00000612005 668 ntBASIC14.77□□□□□ -0.05
ABCA4P78363 SPDYE8P-202ENST00000612377 668 ntBASIC14.77□□□□□ -0.05
ABCA4P78363 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC14.77□□□□□ -0.05
ABCA4P78363 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC14.77□□□□□ -0.05
ABCA4P78363 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
ABCA4P78363 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
ABCA4P78363 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
ABCA4P78363 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
ABCA4P78363 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
ABCA4P78363 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
ABCA4P78363 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC14.76□□□□□ -0.05
ABCA4P78363 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
ABCA4P78363 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
ABCA4P78363 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
ABCA4P78363 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC14.76□□□□□ -0.05
ABCA4P78363 AC090340.1-201ENST00000620778 4980 ntBASIC14.76□□□□□ -0.05
ABCA4P78363 HARS-203ENST00000431330 1774 ntTSL 2 BASIC14.76□□□□□ -0.05
ABCA4P78363 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC14.76□□□□□ -0.05
ABCA4P78363 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
ABCA4P78363 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
ABCA4P78363 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
ABCA4P78363 EDF1-203ENST00000371649 790 ntTSL 2 BASIC14.76□□□□□ -0.05
ABCA4P78363 MYCLP1-201ENST00000372451 1075 ntBASIC14.76□□□□□ -0.05
ABCA4P78363 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
ABCA4P78363 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC14.76□□□□□ -0.05
ABCA4P78363 FAM86GP-201ENST00000448322 971 ntBASIC14.76□□□□□ -0.05
ABCA4P78363 AC074386.1-202ENST00000463561 864 ntBASIC14.76□□□□□ -0.05
ABCA4P78363 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
ABCA4P78363 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC14.76□□□□□ -0.05
ABCA4P78363 TSFM-210ENST00000550559 897 ntTSL 5 BASIC14.76□□□□□ -0.05
ABCA4P78363 AL135744.1-201ENST00000565098 629 ntBASIC14.76□□□□□ -0.05
ABCA4P78363 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC14.76□□□□□ -0.05
ABCA4P78363 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
ABCA4P78363 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
ABCA4P78363 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC14.76□□□□□ -0.05
ABCA4P78363 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
ABCA4P78363 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
ABCA4P78363 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
ABCA4P78363 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
ABCA4P78363 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
ABCA4P78363 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC14.76□□□□□ -0.05
ABCA4P78363 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
ABCA4P78363 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
ABCA4P78363 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
ABCA4P78363 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC14.76□□□□□ -0.05
ABCA4P78363 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
ABCA4P78363 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
ABCA4P78363 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC14.76□□□□□ -0.05
ABCA4P78363 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC14.76□□□□□ -0.05
ABCA4P78363 PTCHD3P3-201ENST00000403073 906 ntBASIC14.76□□□□□ -0.05
ABCA4P78363 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC14.76□□□□□ -0.05
ABCA4P78363 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC14.76□□□□□ -0.05
ABCA4P78363 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC14.76□□□□□ -0.05
ABCA4P78363 RNA5SP421-201ENST00000516864 134 ntBASIC14.76□□□□□ -0.05
ABCA4P78363 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC14.76□□□□□ -0.05
ABCA4P78363 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC14.76□□□□□ -0.05
ABCA4P78363 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC14.76□□□□□ -0.05
ABCA4P78363 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC14.76□□□□□ -0.05
ABCA4P78363 CD276-201ENST00000318424 2738 ntTSL 5 BASIC14.76□□□□□ -0.05
ABCA4P78363 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
ABCA4P78363 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC14.76□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms