Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
COL4A4P53420 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL4A4P53420 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC18.23■□□□□ 0.51
COL4A4P53420 UXT-AS1-201ENST00000590504 1525 ntBASIC18.23■□□□□ 0.51
COL4A4P53420 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC18.23■□□□□ 0.51
COL4A4P53420 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL4A4P53420 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC18.22■□□□□ 0.51
COL4A4P53420 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
COL4A4P53420 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
COL4A4P53420 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC18.22■□□□□ 0.51
COL4A4P53420 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC18.22■□□□□ 0.51
COL4A4P53420 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC18.22■□□□□ 0.51
COL4A4P53420 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC18.22■□□□□ 0.51
COL4A4P53420 TMPRSS11CP-201ENST00000453277 683 ntBASIC18.22■□□□□ 0.51
COL4A4P53420 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
COL4A4P53420 GATD1-206ENST00000526325 756 ntTSL 5 BASIC18.22■□□□□ 0.51
COL4A4P53420 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
COL4A4P53420 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
COL4A4P53420 AL009183.1-201ENST00000603760 355 ntBASIC18.22■□□□□ 0.51
COL4A4P53420 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC18.22■□□□□ 0.51
COL4A4P53420 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
COL4A4P53420 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
COL4A4P53420 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
COL4A4P53420 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL4A4P53420 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC18.22■□□□□ 0.51
COL4A4P53420 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
COL4A4P53420 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL4A4P53420 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
COL4A4P53420 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL4A4P53420 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
COL4A4P53420 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC18.22■□□□□ 0.51
COL4A4P53420 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL4A4P53420 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
COL4A4P53420 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL4A4P53420 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
COL4A4P53420 AL671277.1-201ENST00000429656 993 ntBASIC18.22■□□□□ 0.51
COL4A4P53420 ATP5G2P4-201ENST00000442175 420 ntBASIC18.22■□□□□ 0.51
COL4A4P53420 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC18.22■□□□□ 0.51
COL4A4P53420 AC097493.3-201ENST00000509725 367 ntBASIC18.22■□□□□ 0.51
COL4A4P53420 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC18.22■□□□□ 0.51
COL4A4P53420 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
COL4A4P53420 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC18.22■□□□□ 0.51
COL4A4P53420 AL645728.2-201ENST00000641974 660 ntBASIC18.22■□□□□ 0.51
COL4A4P53420 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
COL4A4P53420 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC18.21■□□□□ 0.51
COL4A4P53420 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
COL4A4P53420 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
COL4A4P53420 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL4A4P53420 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC18.21■□□□□ 0.51
COL4A4P53420 AC100757.3-201ENST00000622361 1406 ntBASIC18.21■□□□□ 0.51
COL4A4P53420 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
COL4A4P53420 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC18.21■□□□□ 0.51
COL4A4P53420 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL4A4P53420 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC18.21■□□□□ 0.51
COL4A4P53420 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL4A4P53420 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL4A4P53420 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL4A4P53420 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC18.21■□□□□ 0.51
COL4A4P53420 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL4A4P53420 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL4A4P53420 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC18.21■□□□□ 0.51
COL4A4P53420 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL4A4P53420 IGHV3-71-201ENST00000523324 359 ntBASIC18.21■□□□□ 0.51
COL4A4P53420 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC18.21■□□□□ 0.51
COL4A4P53420 AL358472.5-202ENST00000641448 1267 ntBASIC18.21■□□□□ 0.51
COL4A4P53420 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL4A4P53420 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC18.21■□□□□ 0.51
COL4A4P53420 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.5
COL4A4P53420 LINC00896-202ENST00000609602 2128 ntBASIC18.2■□□□□ 0.5
COL4A4P53420 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC18.2■□□□□ 0.5
COL4A4P53420 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
COL4A4P53420 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
COL4A4P53420 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
COL4A4P53420 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
COL4A4P53420 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL4A4P53420 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
COL4A4P53420 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC18.2■□□□□ 0.5
COL4A4P53420 AL596325.1-201ENST00000563991 1082 ntBASIC18.2■□□□□ 0.5
COL4A4P53420 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC18.2■□□□□ 0.5
COL4A4P53420 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC18.2■□□□□ 0.5
COL4A4P53420 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC18.2■□□□□ 0.5
COL4A4P53420 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC18.2■□□□□ 0.5
COL4A4P53420 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC18.2■□□□□ 0.5
COL4A4P53420 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC18.2■□□□□ 0.5
COL4A4P53420 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC18.2■□□□□ 0.5
COL4A4P53420 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC18.2■□□□□ 0.5
COL4A4P53420 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC18.2■□□□□ 0.5
COL4A4P53420 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL4A4P53420 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL4A4P53420 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
COL4A4P53420 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL4A4P53420 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
COL4A4P53420 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
COL4A4P53420 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
COL4A4P53420 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC18.19■□□□□ 0.5
COL4A4P53420 TSSK5P-201ENST00000423978 907 ntBASIC18.19■□□□□ 0.5
COL4A4P53420 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
COL4A4P53420 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC18.19■□□□□ 0.5
COL4A4P53420 MMP17-203ENST00000535004 719 ntTSL 3 BASIC18.19■□□□□ 0.5
COL4A4P53420 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC18.19■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms