Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC16.22■□□□□ 0.19
RFX3P48380 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
RFX3P48380 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC16.22■□□□□ 0.19
RFX3P48380 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
RFX3P48380 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RFX3P48380 KRT8P10-201ENST00000450021 1447 ntBASIC16.22■□□□□ 0.19
RFX3P48380 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
RFX3P48380 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC16.22■□□□□ 0.19
RFX3P48380 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RFX3P48380 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC16.22■□□□□ 0.19
RFX3P48380 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
RFX3P48380 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RFX3P48380 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RFX3P48380 AC080080.1-201ENST00000625121 2420 ntBASIC16.22■□□□□ 0.19
RFX3P48380 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC16.22■□□□□ 0.19
RFX3P48380 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC16.22■□□□□ 0.19
RFX3P48380 AC005104.2-201ENST00000427818 678 ntBASIC16.22■□□□□ 0.19
RFX3P48380 AC002558.1-201ENST00000488906 803 ntBASIC16.22■□□□□ 0.19
RFX3P48380 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC16.22■□□□□ 0.19
RFX3P48380 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC16.22■□□□□ 0.19
RFX3P48380 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC16.22■□□□□ 0.19
RFX3P48380 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC16.22■□□□□ 0.19
RFX3P48380 AC011467.2-201ENST00000598425 242 ntBASIC16.22■□□□□ 0.19
RFX3P48380 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC16.22■□□□□ 0.19
RFX3P48380 TNRC18P3-201ENST00000441896 2691 ntBASIC16.22■□□□□ 0.19
RFX3P48380 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
RFX3P48380 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
RFX3P48380 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
RFX3P48380 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC16.22■□□□□ 0.19
RFX3P48380 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
RFX3P48380 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
RFX3P48380 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
RFX3P48380 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RFX3P48380 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
RFX3P48380 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
RFX3P48380 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RFX3P48380 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
RFX3P48380 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC16.21■□□□□ 0.19
RFX3P48380 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
RFX3P48380 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC16.21■□□□□ 0.19
RFX3P48380 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RFX3P48380 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
RFX3P48380 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC16.21■□□□□ 0.19
RFX3P48380 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RFX3P48380 TPR-209ENST00000613151 2478 ntTSL 5 BASIC16.21■□□□□ 0.19
RFX3P48380 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC16.21■□□□□ 0.19
RFX3P48380 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RFX3P48380 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
RFX3P48380 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RFX3P48380 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RFX3P48380 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RFX3P48380 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
RFX3P48380 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
RFX3P48380 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RFX3P48380 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
RFX3P48380 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
RFX3P48380 AC103564.2-201ENST00000432853 1299 ntBASIC16.21■□□□□ 0.19
RFX3P48380 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
RFX3P48380 AC122714.2-201ENST00000502787 707 ntBASIC16.21■□□□□ 0.19
RFX3P48380 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC16.21■□□□□ 0.19
RFX3P48380 AC019129.2-201ENST00000609837 1235 ntBASIC16.21■□□□□ 0.19
RFX3P48380 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
RFX3P48380 AL139327.4-201ENST00000612362 153 ntBASIC16.21■□□□□ 0.19
RFX3P48380 AC114341.1-201ENST00000618070 349 ntBASIC16.21■□□□□ 0.19
RFX3P48380 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
RFX3P48380 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RFX3P48380 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
RFX3P48380 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
RFX3P48380 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC16.21■□□□□ 0.19
RFX3P48380 AMT-250ENST00000637682 1823 ntTSL 5 BASIC16.21■□□□□ 0.19
RFX3P48380 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC16.21■□□□□ 0.19
RFX3P48380 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC16.21■□□□□ 0.19
RFX3P48380 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC16.21■□□□□ 0.18
RFX3P48380 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC16.21■□□□□ 0.18
RFX3P48380 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC16.21■□□□□ 0.18
RFX3P48380 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC16.21■□□□□ 0.18
RFX3P48380 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
RFX3P48380 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
RFX3P48380 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
RFX3P48380 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
RFX3P48380 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
RFX3P48380 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
RFX3P48380 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
RFX3P48380 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
RFX3P48380 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
RFX3P48380 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC16.2■□□□□ 0.18
RFX3P48380 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RFX3P48380 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC16.2■□□□□ 0.18
RFX3P48380 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
RFX3P48380 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RFX3P48380 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
RFX3P48380 COX5A-204ENST00000567270 579 ntTSL 3 BASIC16.2■□□□□ 0.18
RFX3P48380 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC16.2■□□□□ 0.18
RFX3P48380 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
RFX3P48380 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC16.2■□□□□ 0.18
RFX3P48380 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC16.2■□□□□ 0.18
RFX3P48380 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RFX3P48380 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC16.2■□□□□ 0.18
RFX3P48380 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC16.2■□□□□ 0.18
RFX3P48380 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms