Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
CDX1P47902 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC14.13□□□□□ -0.15
CDX1P47902 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC14.13□□□□□ -0.15
CDX1P47902 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC14.13□□□□□ -0.15
CDX1P47902 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC14.13□□□□□ -0.15
CDX1P47902 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CDX1P47902 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CDX1P47902 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CDX1P47902 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CDX1P47902 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CDX1P47902 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CDX1P47902 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC14.13□□□□□ -0.15
CDX1P47902 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
CDX1P47902 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
CDX1P47902 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
CDX1P47902 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
CDX1P47902 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CDX1P47902 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CDX1P47902 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
CDX1P47902 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CDX1P47902 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
CDX1P47902 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
CDX1P47902 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
CDX1P47902 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
CDX1P47902 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
CDX1P47902 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CDX1P47902 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
CDX1P47902 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
CDX1P47902 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CDX1P47902 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
CDX1P47902 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC14.12□□□□□ -0.15
CDX1P47902 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
CDX1P47902 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CDX1P47902 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CDX1P47902 IPPK-202ENST00000375522 882 ntTSL 3 BASIC14.12□□□□□ -0.15
CDX1P47902 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CDX1P47902 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC14.12□□□□□ -0.15
CDX1P47902 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC14.12□□□□□ -0.15
CDX1P47902 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC14.12□□□□□ -0.15
CDX1P47902 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CDX1P47902 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC14.12□□□□□ -0.15
CDX1P47902 MIR3652-201ENST00000579335 131 ntBASIC14.12□□□□□ -0.15
CDX1P47902 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
CDX1P47902 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
CDX1P47902 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC14.12□□□□□ -0.15
CDX1P47902 ANKRD20A8P-203ENST00000641373 517 ntBASIC14.12□□□□□ -0.15
CDX1P47902 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CDX1P47902 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
CDX1P47902 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CDX1P47902 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
CDX1P47902 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CDX1P47902 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC14.12□□□□□ -0.15
CDX1P47902 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CDX1P47902 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CDX1P47902 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
CDX1P47902 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CDX1P47902 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
CDX1P47902 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CDX1P47902 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
CDX1P47902 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC14.11□□□□□ -0.15
CDX1P47902 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CDX1P47902 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CDX1P47902 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CDX1P47902 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC14.11□□□□□ -0.15
CDX1P47902 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CDX1P47902 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC14.11□□□□□ -0.15
CDX1P47902 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
CDX1P47902 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CDX1P47902 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CDX1P47902 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CDX1P47902 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CDX1P47902 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CDX1P47902 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
CDX1P47902 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
CDX1P47902 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CDX1P47902 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CDX1P47902 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CDX1P47902 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
CDX1P47902 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CDX1P47902 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
CDX1P47902 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CDX1P47902 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC14.11□□□□□ -0.15
CDX1P47902 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC14.11□□□□□ -0.15
CDX1P47902 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC14.11□□□□□ -0.15
CDX1P47902 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CDX1P47902 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
CDX1P47902 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC14.11□□□□□ -0.15
CDX1P47902 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC14.11□□□□□ -0.15
CDX1P47902 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC14.11□□□□□ -0.15
CDX1P47902 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CDX1P47902 TOLLIP-AS1-201ENST00000530897 939 ntBASIC14.11□□□□□ -0.15
CDX1P47902 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC14.11□□□□□ -0.15
CDX1P47902 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC14.11□□□□□ -0.15
CDX1P47902 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC14.11□□□□□ -0.15
CDX1P47902 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CDX1P47902 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC14.11□□□□□ -0.15
CDX1P47902 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CDX1P47902 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC14.11□□□□□ -0.15
CDX1P47902 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC14.11□□□□□ -0.15
CDX1P47902 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms