Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC17.87■□□□□ 0.45
PTPN9P43378 PP7080-204ENST00000510714 601 ntTSL 3 BASIC17.87■□□□□ 0.45
PTPN9P43378 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC17.87■□□□□ 0.45
PTPN9P43378 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC17.87■□□□□ 0.45
PTPN9P43378 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC17.87■□□□□ 0.45
PTPN9P43378 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC17.87■□□□□ 0.45
PTPN9P43378 TERC-201ENST00000602385 541 ntBASIC17.87■□□□□ 0.45
PTPN9P43378 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC17.87■□□□□ 0.45
PTPN9P43378 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
PTPN9P43378 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PTPN9P43378 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
PTPN9P43378 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PTPN9P43378 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC17.87■□□□□ 0.45
PTPN9P43378 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PTPN9P43378 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
PTPN9P43378 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PTPN9P43378 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PTPN9P43378 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
PTPN9P43378 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC17.87■□□□□ 0.45
PTPN9P43378 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
PTPN9P43378 AC006504.4-201ENST00000592118 1568 ntBASIC17.87■□□□□ 0.45
PTPN9P43378 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
PTPN9P43378 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
PTPN9P43378 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC17.87■□□□□ 0.45
PTPN9P43378 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.87■□□□□ 0.45
PTPN9P43378 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
PTPN9P43378 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC17.86■□□□□ 0.45
PTPN9P43378 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTPN9P43378 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC17.86■□□□□ 0.45
PTPN9P43378 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
PTPN9P43378 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTPN9P43378 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTPN9P43378 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTPN9P43378 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTPN9P43378 AC092068.3-201ENST00000587894 2016 ntBASIC17.86■□□□□ 0.45
PTPN9P43378 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTPN9P43378 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTPN9P43378 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
PTPN9P43378 MED22-202ENST00000371999 987 ntTSL 3 BASIC17.86■□□□□ 0.45
PTPN9P43378 AC073621.1-201ENST00000392730 636 ntBASIC17.86■□□□□ 0.45
PTPN9P43378 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTPN9P43378 HNRNPDP1-201ENST00000439535 754 ntBASIC17.86■□□□□ 0.45
PTPN9P43378 PPIE-208ENST00000470213 927 ntTSL 3 BASIC17.86■□□□□ 0.45
PTPN9P43378 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC17.86■□□□□ 0.45
PTPN9P43378 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC17.86■□□□□ 0.45
PTPN9P43378 AP002469.2-201ENST00000531724 424 ntBASIC17.86■□□□□ 0.45
PTPN9P43378 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC17.86■□□□□ 0.45
PTPN9P43378 AL160237.2-201ENST00000556165 472 ntBASIC17.86■□□□□ 0.45
PTPN9P43378 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC17.86■□□□□ 0.45
PTPN9P43378 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC17.86■□□□□ 0.45
PTPN9P43378 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC17.86■□□□□ 0.45
PTPN9P43378 AC008735.5-201ENST00000623544 497 ntBASIC17.86■□□□□ 0.45
PTPN9P43378 AL805961.1-202ENST00000641562 540 ntBASIC17.86■□□□□ 0.45
PTPN9P43378 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTPN9P43378 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
PTPN9P43378 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
PTPN9P43378 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
PTPN9P43378 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTPN9P43378 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTPN9P43378 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTPN9P43378 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTPN9P43378 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC17.86■□□□□ 0.45
PTPN9P43378 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTPN9P43378 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTPN9P43378 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC17.86■□□□□ 0.45
PTPN9P43378 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTPN9P43378 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTPN9P43378 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTPN9P43378 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
PTPN9P43378 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
PTPN9P43378 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
PTPN9P43378 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PTPN9P43378 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
PTPN9P43378 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PTPN9P43378 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PTPN9P43378 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PTPN9P43378 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PTPN9P43378 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC17.85■□□□□ 0.45
PTPN9P43378 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
PTPN9P43378 PTCHD3P3-201ENST00000403073 906 ntBASIC17.85■□□□□ 0.45
PTPN9P43378 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PTPN9P43378 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
PTPN9P43378 PAWRP1-201ENST00000451083 565 ntBASIC17.85■□□□□ 0.45
PTPN9P43378 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC17.85■□□□□ 0.45
PTPN9P43378 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC17.85■□□□□ 0.45
PTPN9P43378 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC17.85■□□□□ 0.45
PTPN9P43378 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC17.85■□□□□ 0.45
PTPN9P43378 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PTPN9P43378 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC17.85■□□□□ 0.45
PTPN9P43378 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC17.85■□□□□ 0.45
PTPN9P43378 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC17.85■□□□□ 0.45
PTPN9P43378 ETFA-208ENST00000559602 792 ntTSL 3 BASIC17.85■□□□□ 0.45
PTPN9P43378 AD000864.1-201ENST00000624076 2295 ntBASIC17.85■□□□□ 0.45
PTPN9P43378 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC17.85■□□□□ 0.45
PTPN9P43378 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC17.85■□□□□ 0.45
PTPN9P43378 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PTPN9P43378 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
PTPN9P43378 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PTPN9P43378 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PTPN9P43378 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 54.6 ms