Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
CIITAP33076 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC19.32■□□□□ 0.68
CIITAP33076 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC19.32■□□□□ 0.68
CIITAP33076 RHOQP3-201ENST00000437982 621 ntBASIC19.32■□□□□ 0.68
CIITAP33076 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC19.32■□□□□ 0.68
CIITAP33076 AC096734.2-201ENST00000562054 433 ntBASIC19.32■□□□□ 0.68
CIITAP33076 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
CIITAP33076 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC19.32■□□□□ 0.68
CIITAP33076 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
CIITAP33076 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CIITAP33076 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
CIITAP33076 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
CIITAP33076 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
CIITAP33076 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
CIITAP33076 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
CIITAP33076 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CIITAP33076 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC19.32■□□□□ 0.68
CIITAP33076 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CIITAP33076 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
CIITAP33076 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC19.32■□□□□ 0.68
CIITAP33076 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CIITAP33076 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CIITAP33076 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CIITAP33076 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CIITAP33076 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CIITAP33076 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CIITAP33076 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CIITAP33076 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CIITAP33076 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
CIITAP33076 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CIITAP33076 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CIITAP33076 BEX3-201ENST00000361298 921 ntTSL 2 BASIC19.31■□□□□ 0.68
CIITAP33076 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
CIITAP33076 HNRNPA1P28-201ENST00000424481 961 ntBASIC19.31■□□□□ 0.68
CIITAP33076 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC19.31■□□□□ 0.68
CIITAP33076 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC19.31■□□□□ 0.68
CIITAP33076 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC19.31■□□□□ 0.68
CIITAP33076 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
CIITAP33076 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC19.31■□□□□ 0.68
CIITAP33076 NMU-202ENST00000505262 693 ntTSL 3 BASIC19.31■□□□□ 0.68
CIITAP33076 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC19.31■□□□□ 0.68
CIITAP33076 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC19.31■□□□□ 0.68
CIITAP33076 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CIITAP33076 CYB561-216ENST00000582297 897 ntTSL 3 BASIC19.31■□□□□ 0.68
CIITAP33076 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC19.31■□□□□ 0.68
CIITAP33076 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC19.31■□□□□ 0.68
CIITAP33076 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC19.31■□□□□ 0.68
CIITAP33076 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CIITAP33076 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CIITAP33076 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CIITAP33076 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CIITAP33076 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CIITAP33076 AC092053.1-201ENST00000605787 1936 ntBASIC19.31■□□□□ 0.68
CIITAP33076 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC19.31■□□□□ 0.68
CIITAP33076 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC19.31■□□□□ 0.68
CIITAP33076 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CIITAP33076 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
CIITAP33076 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CIITAP33076 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
CIITAP33076 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CIITAP33076 LETM1P2-201ENST00000597330 2178 ntBASIC19.3■□□□□ 0.68
CIITAP33076 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC19.3■□□□□ 0.68
CIITAP33076 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC19.3■□□□□ 0.68
CIITAP33076 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC19.3■□□□□ 0.68
CIITAP33076 CEP83-AS1-201ENST00000623122 2482 ntBASIC19.3■□□□□ 0.68
CIITAP33076 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CIITAP33076 CYP51A1P2-201ENST00000419457 1499 ntBASIC19.3■□□□□ 0.68
CIITAP33076 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
CIITAP33076 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CIITAP33076 AR-207ENST00000612010 3896 ntTSL 5 BASIC19.3■□□□□ 0.68
CIITAP33076 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CIITAP33076 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CIITAP33076 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CIITAP33076 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CIITAP33076 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CIITAP33076 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CIITAP33076 FABP5-202ENST00000396359 986 ntTSL 5 BASIC19.3■□□□□ 0.68
CIITAP33076 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CIITAP33076 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC19.3■□□□□ 0.68
CIITAP33076 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC19.3■□□□□ 0.68
CIITAP33076 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC19.3■□□□□ 0.68
CIITAP33076 RNA5SP416-201ENST00000516838 111 ntBASIC19.3■□□□□ 0.68
CIITAP33076 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC19.3■□□□□ 0.68
CIITAP33076 ACTL9-202ENST00000612068 1252 ntBASIC19.3■□□□□ 0.68
CIITAP33076 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
CIITAP33076 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CIITAP33076 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC19.3■□□□□ 0.68
CIITAP33076 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CIITAP33076 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC19.3■□□□□ 0.68
CIITAP33076 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
CIITAP33076 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CIITAP33076 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CIITAP33076 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CIITAP33076 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CIITAP33076 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
CIITAP33076 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CIITAP33076 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC19.29■□□□□ 0.68
CIITAP33076 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
CIITAP33076 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CIITAP33076 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms