Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HLA-DMBP28068 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HLA-DMBP28068 AL845331.1-201ENST00000424978 1190 ntBASIC13.16□□□□□ -0.3
HLA-DMBP28068 HCG4P8-203ENST00000443049 980 ntBASIC13.16□□□□□ -0.3
HLA-DMBP28068 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC13.16□□□□□ -0.3
HLA-DMBP28068 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
HLA-DMBP28068 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HLA-DMBP28068 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HLA-DMBP28068 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC13.16□□□□□ -0.3
HLA-DMBP28068 GUSBP12-201ENST00000513727 720 ntBASIC13.16□□□□□ -0.3
HLA-DMBP28068 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC13.16□□□□□ -0.3
HLA-DMBP28068 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC13.16□□□□□ -0.3
HLA-DMBP28068 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC13.16□□□□□ -0.3
HLA-DMBP28068 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HLA-DMBP28068 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HLA-DMBP28068 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
HLA-DMBP28068 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HLA-DMBP28068 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HLA-DMBP28068 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
HLA-DMBP28068 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HLA-DMBP28068 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
HLA-DMBP28068 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HLA-DMBP28068 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC13.16□□□□□ -0.3
HLA-DMBP28068 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC13.16□□□□□ -0.3
HLA-DMBP28068 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC13.16□□□□□ -0.3
HLA-DMBP28068 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
HLA-DMBP28068 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC13.16□□□□□ -0.3
HLA-DMBP28068 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC13.16□□□□□ -0.3
HLA-DMBP28068 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HLA-DMBP28068 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
HLA-DMBP28068 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HLA-DMBP28068 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC13.16□□□□□ -0.3
HLA-DMBP28068 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
HLA-DMBP28068 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HLA-DMBP28068 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HLA-DMBP28068 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
HLA-DMBP28068 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
HLA-DMBP28068 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HLA-DMBP28068 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HLA-DMBP28068 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HLA-DMBP28068 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HLA-DMBP28068 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC13.15□□□□□ -0.3
HLA-DMBP28068 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
HLA-DMBP28068 PCDHB19P-201ENST00000570871 2371 ntBASIC13.15□□□□□ -0.3
HLA-DMBP28068 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HLA-DMBP28068 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HLA-DMBP28068 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC13.15□□□□□ -0.3
HLA-DMBP28068 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HLA-DMBP28068 AC018695.7-201ENST00000624587 2492 ntBASIC13.15□□□□□ -0.3
HLA-DMBP28068 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HLA-DMBP28068 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC13.15□□□□□ -0.3
HLA-DMBP28068 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC13.15□□□□□ -0.3
HLA-DMBP28068 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HLA-DMBP28068 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HLA-DMBP28068 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HLA-DMBP28068 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC13.15□□□□□ -0.3
HLA-DMBP28068 RN7SL606P-201ENST00000472779 293 ntBASIC13.15□□□□□ -0.3
HLA-DMBP28068 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC13.15□□□□□ -0.3
HLA-DMBP28068 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC13.15□□□□□ -0.3
HLA-DMBP28068 IGHV3-52-201ENST00000519770 353 ntBASIC13.15□□□□□ -0.3
HLA-DMBP28068 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC13.15□□□□□ -0.3
HLA-DMBP28068 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC13.15□□□□□ -0.3
HLA-DMBP28068 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC13.15□□□□□ -0.3
HLA-DMBP28068 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC13.15□□□□□ -0.3
HLA-DMBP28068 AC011498.5-201ENST00000592027 486 ntBASIC13.15□□□□□ -0.3
HLA-DMBP28068 AC005336.2-201ENST00000593183 939 ntBASIC13.15□□□□□ -0.3
HLA-DMBP28068 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HLA-DMBP28068 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC13.15□□□□□ -0.3
HLA-DMBP28068 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC13.15□□□□□ -0.3
HLA-DMBP28068 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HLA-DMBP28068 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HLA-DMBP28068 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HLA-DMBP28068 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
HLA-DMBP28068 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HLA-DMBP28068 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
HLA-DMBP28068 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HLA-DMBP28068 AC092068.3-201ENST00000587894 2016 ntBASIC13.15□□□□□ -0.3
HLA-DMBP28068 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HLA-DMBP28068 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC13.15□□□□□ -0.3
HLA-DMBP28068 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
HLA-DMBP28068 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HLA-DMBP28068 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
HLA-DMBP28068 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
HLA-DMBP28068 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC13.14□□□□□ -0.31
HLA-DMBP28068 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
HLA-DMBP28068 AC125634.1-201ENST00000438758 1403 ntBASIC13.14□□□□□ -0.31
HLA-DMBP28068 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC13.14□□□□□ -0.31
HLA-DMBP28068 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC13.14□□□□□ -0.31
HLA-DMBP28068 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC13.14□□□□□ -0.31
HLA-DMBP28068 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
HLA-DMBP28068 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
HLA-DMBP28068 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
HLA-DMBP28068 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HLA-DMBP28068 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
HLA-DMBP28068 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HLA-DMBP28068 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HLA-DMBP28068 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
HLA-DMBP28068 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
HLA-DMBP28068 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
HLA-DMBP28068 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms