Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC21.39■■□□□ 1.01
COL5A3P25940 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
COL5A3P25940 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
COL5A3P25940 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
COL5A3P25940 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL5A3P25940 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL5A3P25940 CR383656.12-201ENST00000549567 513 ntBASIC21.38■■□□□ 1.01
COL5A3P25940 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC21.38■■□□□ 1.01
COL5A3P25940 MPI-209ENST00000564003 1195 ntTSL 2 BASIC21.38■■□□□ 1.01
COL5A3P25940 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC21.38■■□□□ 1.01
COL5A3P25940 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
COL5A3P25940 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL5A3P25940 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL5A3P25940 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL5A3P25940 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
COL5A3P25940 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC21.38■■□□□ 1.01
COL5A3P25940 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL5A3P25940 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
COL5A3P25940 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
COL5A3P25940 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
COL5A3P25940 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
COL5A3P25940 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC21.38■■□□□ 1.01
COL5A3P25940 U91328.1-201ENST00000437528 223 ntBASIC21.38■■□□□ 1.01
COL5A3P25940 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC21.38■■□□□ 1.01
COL5A3P25940 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
COL5A3P25940 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC21.38■■□□□ 1.01
COL5A3P25940 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
COL5A3P25940 REEP4-207ENST00000523293 913 ntTSL 3 BASIC21.38■■□□□ 1.01
COL5A3P25940 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC21.38■■□□□ 1.01
COL5A3P25940 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC21.38■■□□□ 1.01
COL5A3P25940 AC140912.1-201ENST00000577171 1054 ntBASIC21.38■■□□□ 1.01
COL5A3P25940 GPER1-207ENST00000619052 571 ntTSL 2 BASIC21.38■■□□□ 1.01
COL5A3P25940 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC21.38■■□□□ 1.01
COL5A3P25940 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
COL5A3P25940 CU639417.3-201ENST00000624240 1404 ntBASIC21.37■■□□□ 1.01
COL5A3P25940 GRAMD4P3-201ENST00000621665 1669 ntBASIC21.37■■□□□ 1.01
COL5A3P25940 AC116353.5-201ENST00000638148 1699 ntBASIC21.37■■□□□ 1.01
COL5A3P25940 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC21.37■■□□□ 1.01
COL5A3P25940 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
COL5A3P25940 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
COL5A3P25940 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC21.37■■□□□ 1.01
COL5A3P25940 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
COL5A3P25940 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC21.37■■□□□ 1.01
COL5A3P25940 AL354751.1-201ENST00000412768 1863 ntBASIC21.37■■□□□ 1.01
COL5A3P25940 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
COL5A3P25940 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
COL5A3P25940 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
COL5A3P25940 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
COL5A3P25940 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC21.37■■□□□ 1.01
COL5A3P25940 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC21.37■■□□□ 1.01
COL5A3P25940 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
COL5A3P25940 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC21.37■■□□□ 1.01
COL5A3P25940 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC21.37■■□□□ 1.01
COL5A3P25940 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC21.37■■□□□ 1.01
COL5A3P25940 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC21.37■■□□□ 1.01
COL5A3P25940 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
COL5A3P25940 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
COL5A3P25940 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
COL5A3P25940 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
COL5A3P25940 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC21.36■■□□□ 1.01
COL5A3P25940 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
COL5A3P25940 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
COL5A3P25940 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
COL5A3P25940 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC21.36■■□□□ 1.01
COL5A3P25940 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
COL5A3P25940 FRMD8P1-201ENST00000440433 1524 ntBASIC21.36■■□□□ 1.01
COL5A3P25940 AC012317.2-201ENST00000623305 2251 ntBASIC21.36■■□□□ 1.01
COL5A3P25940 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
COL5A3P25940 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC21.36■■□□□ 1.01
COL5A3P25940 PRR29-204ENST00000577953 565 ntTSL 4 BASIC21.36■■□□□ 1.01
COL5A3P25940 AC027307.3-201ENST00000594262 1100 ntBASIC21.36■■□□□ 1.01
COL5A3P25940 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC21.36■■□□□ 1.01
COL5A3P25940 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC21.36■■□□□ 1.01
COL5A3P25940 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
COL5A3P25940 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
COL5A3P25940 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
COL5A3P25940 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
COL5A3P25940 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
COL5A3P25940 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
COL5A3P25940 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
COL5A3P25940 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC21.35■■□□□ 1.01
COL5A3P25940 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
COL5A3P25940 KRT8P49-201ENST00000604166 1432 ntBASIC21.35■■□□□ 1.01
COL5A3P25940 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
COL5A3P25940 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC21.35■■□□□ 1.01
COL5A3P25940 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
COL5A3P25940 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
COL5A3P25940 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC21.35■■□□□ 1.01
COL5A3P25940 AL512638.1-201ENST00000457493 794 ntBASIC21.35■■□□□ 1.01
COL5A3P25940 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC21.35■■□□□ 1.01
COL5A3P25940 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC21.35■■□□□ 1.01
COL5A3P25940 CDK4-206ENST00000549606 558 ntTSL 2 BASIC21.35■■□□□ 1.01
COL5A3P25940 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
COL5A3P25940 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
COL5A3P25940 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
COL5A3P25940 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
COL5A3P25940 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC21.35■■□□□ 1.01
COL5A3P25940 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC21.35■■□□□ 1.01
COL5A3P25940 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC21.35■■□□□ 1.01
COL5A3P25940 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms