Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
COL5A1P20908 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
COL5A1P20908 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
COL5A1P20908 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC16.33■□□□□ 0.21
COL5A1P20908 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC16.33■□□□□ 0.21
COL5A1P20908 AC100757.3-201ENST00000622361 1406 ntBASIC16.33■□□□□ 0.21
COL5A1P20908 AL355312.1-201ENST00000407115 2176 ntBASIC16.33■□□□□ 0.21
COL5A1P20908 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC16.33■□□□□ 0.2
COL5A1P20908 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
COL5A1P20908 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL5A1P20908 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC16.33■□□□□ 0.2
COL5A1P20908 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
COL5A1P20908 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL5A1P20908 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL5A1P20908 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC16.33■□□□□ 0.2
COL5A1P20908 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL5A1P20908 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC16.33■□□□□ 0.2
COL5A1P20908 RAC2-204ENST00000406508 893 ntTSL 5 BASIC16.33■□□□□ 0.2
COL5A1P20908 TSSK5P-201ENST00000423978 907 ntBASIC16.33■□□□□ 0.2
COL5A1P20908 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC16.33■□□□□ 0.2
COL5A1P20908 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
COL5A1P20908 MEIS3P1-201ENST00000495167 958 ntBASIC16.33■□□□□ 0.2
COL5A1P20908 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC16.33■□□□□ 0.2
COL5A1P20908 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
COL5A1P20908 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC16.33■□□□□ 0.2
COL5A1P20908 AC091167.2-201ENST00000579581 588 ntBASIC16.33■□□□□ 0.2
COL5A1P20908 AC027307.2-201ENST00000591252 911 ntBASIC16.33■□□□□ 0.2
COL5A1P20908 AC025048.6-201ENST00000634326 1161 ntBASIC16.33■□□□□ 0.2
COL5A1P20908 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
COL5A1P20908 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
COL5A1P20908 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC16.33■□□□□ 0.2
COL5A1P20908 NARF-206ENST00000457415 1668 ntTSL 5 BASIC16.33■□□□□ 0.2
COL5A1P20908 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL5A1P20908 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL5A1P20908 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL5A1P20908 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC16.32■□□□□ 0.2
COL5A1P20908 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
COL5A1P20908 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC16.32■□□□□ 0.2
COL5A1P20908 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
COL5A1P20908 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC16.32■□□□□ 0.2
COL5A1P20908 SLC22A20-204ENST00000530038 1673 ntBASIC16.32■□□□□ 0.2
COL5A1P20908 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC16.32■□□□□ 0.2
COL5A1P20908 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL5A1P20908 CALY-202ENST00000368555 783 ntTSL 2 BASIC16.32■□□□□ 0.2
COL5A1P20908 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
COL5A1P20908 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
COL5A1P20908 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC16.32■□□□□ 0.2
COL5A1P20908 GOLGA6L11P-201ENST00000417252 1298 ntBASIC16.32■□□□□ 0.2
COL5A1P20908 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC16.32■□□□□ 0.2
COL5A1P20908 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC16.32■□□□□ 0.2
COL5A1P20908 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL5A1P20908 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL5A1P20908 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC16.32■□□□□ 0.2
COL5A1P20908 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
COL5A1P20908 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC16.32■□□□□ 0.2
COL5A1P20908 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL5A1P20908 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL5A1P20908 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC16.32■□□□□ 0.2
COL5A1P20908 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
COL5A1P20908 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
COL5A1P20908 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
COL5A1P20908 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC16.31■□□□□ 0.2
COL5A1P20908 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
COL5A1P20908 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC16.31■□□□□ 0.2
COL5A1P20908 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC16.31■□□□□ 0.2
COL5A1P20908 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC16.31■□□□□ 0.2
COL5A1P20908 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC16.31■□□□□ 0.2
COL5A1P20908 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
COL5A1P20908 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
COL5A1P20908 SATB1-217ENST00000493952 626 ntTSL 3 BASIC16.31■□□□□ 0.2
COL5A1P20908 AP005018.1-201ENST00000525475 301 ntBASIC16.31■□□□□ 0.2
COL5A1P20908 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
COL5A1P20908 AC009118.2-201ENST00000613275 655 ntBASIC16.31■□□□□ 0.2
COL5A1P20908 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
COL5A1P20908 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC16.31■□□□□ 0.2
COL5A1P20908 AL358472.5-202ENST00000641448 1267 ntBASIC16.31■□□□□ 0.2
COL5A1P20908 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL5A1P20908 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC16.31■□□□□ 0.2
COL5A1P20908 AC012317.2-201ENST00000623305 2251 ntBASIC16.31■□□□□ 0.2
COL5A1P20908 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL5A1P20908 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL5A1P20908 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC16.31■□□□□ 0.2
COL5A1P20908 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL5A1P20908 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL5A1P20908 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL5A1P20908 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC16.31■□□□□ 0.2
COL5A1P20908 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC16.31■□□□□ 0.2
COL5A1P20908 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC16.31■□□□□ 0.2
COL5A1P20908 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
COL5A1P20908 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
COL5A1P20908 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC16.31■□□□□ 0.2
COL5A1P20908 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC16.31■□□□□ 0.2
COL5A1P20908 TDG-209ENST00000544861 1387 ntTSL 2 BASIC16.31■□□□□ 0.2
COL5A1P20908 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
COL5A1P20908 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
COL5A1P20908 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
COL5A1P20908 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL5A1P20908 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL5A1P20908 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL5A1P20908 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms