Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
ERCC3P19447 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC19.92■□□□□ 0.78
ERCC3P19447 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
ERCC3P19447 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
ERCC3P19447 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
ERCC3P19447 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
ERCC3P19447 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
ERCC3P19447 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
ERCC3P19447 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC19.92■□□□□ 0.78
ERCC3P19447 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC19.92■□□□□ 0.78
ERCC3P19447 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC19.92■□□□□ 0.78
ERCC3P19447 RFPL4AP1-201ENST00000530883 850 ntBASIC19.92■□□□□ 0.78
ERCC3P19447 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
ERCC3P19447 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC19.92■□□□□ 0.78
ERCC3P19447 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
ERCC3P19447 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
ERCC3P19447 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
ERCC3P19447 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
ERCC3P19447 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
ERCC3P19447 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
ERCC3P19447 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC19.92■□□□□ 0.78
ERCC3P19447 AC025580.3-201ENST00000617932 1424 ntBASIC19.92■□□□□ 0.78
ERCC3P19447 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
ERCC3P19447 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
ERCC3P19447 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
ERCC3P19447 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
ERCC3P19447 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
ERCC3P19447 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
ERCC3P19447 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
ERCC3P19447 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
ERCC3P19447 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
ERCC3P19447 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
ERCC3P19447 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
ERCC3P19447 PI4KAP1-204ENST00000612579 1703 ntBASIC19.91■□□□□ 0.78
ERCC3P19447 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
ERCC3P19447 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
ERCC3P19447 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC19.91■□□□□ 0.78
ERCC3P19447 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
ERCC3P19447 PON3-203ENST00000427422 894 ntTSL 3 BASIC19.91■□□□□ 0.78
ERCC3P19447 CYMP-203ENST00000474680 1263 ntBASIC19.91■□□□□ 0.78
ERCC3P19447 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
ERCC3P19447 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
ERCC3P19447 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC19.91■□□□□ 0.78
ERCC3P19447 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC19.91■□□□□ 0.78
ERCC3P19447 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
ERCC3P19447 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
ERCC3P19447 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
ERCC3P19447 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC19.91■□□□□ 0.78
ERCC3P19447 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
ERCC3P19447 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC19.91■□□□□ 0.78
ERCC3P19447 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
ERCC3P19447 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
ERCC3P19447 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC19.91■□□□□ 0.78
ERCC3P19447 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
ERCC3P19447 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC19.91■□□□□ 0.78
ERCC3P19447 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
ERCC3P19447 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
ERCC3P19447 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
ERCC3P19447 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
ERCC3P19447 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
ERCC3P19447 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC19.9■□□□□ 0.78
ERCC3P19447 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
ERCC3P19447 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
ERCC3P19447 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
ERCC3P19447 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
ERCC3P19447 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
ERCC3P19447 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC19.9■□□□□ 0.78
ERCC3P19447 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
ERCC3P19447 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
ERCC3P19447 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
ERCC3P19447 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
ERCC3P19447 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
ERCC3P19447 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
ERCC3P19447 PUS1-205ENST00000535067 838 ntTSL 3 BASIC19.9■□□□□ 0.78
ERCC3P19447 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC19.9■□□□□ 0.78
ERCC3P19447 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC19.9■□□□□ 0.78
ERCC3P19447 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC19.9■□□□□ 0.78
ERCC3P19447 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC19.9■□□□□ 0.78
ERCC3P19447 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC19.9■□□□□ 0.78
ERCC3P19447 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
ERCC3P19447 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
ERCC3P19447 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
ERCC3P19447 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
ERCC3P19447 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
ERCC3P19447 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC19.9■□□□□ 0.78
ERCC3P19447 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
ERCC3P19447 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC19.9■□□□□ 0.78
ERCC3P19447 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
ERCC3P19447 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
ERCC3P19447 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
ERCC3P19447 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC19.9■□□□□ 0.78
ERCC3P19447 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.78
ERCC3P19447 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ERCC3P19447 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ERCC3P19447 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ERCC3P19447 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ERCC3P19447 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ERCC3P19447 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
ERCC3P19447 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ERCC3P19447 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms