Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
COL1A1P02452 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL1A1P02452 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL1A1P02452 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
COL1A1P02452 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
COL1A1P02452 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL1A1P02452 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL1A1P02452 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL1A1P02452 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
COL1A1P02452 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
COL1A1P02452 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
COL1A1P02452 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
COL1A1P02452 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL1A1P02452 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL1A1P02452 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL1A1P02452 TIMM8BP1-201ENST00000452384 211 ntBASIC20.53■□□□□ 0.88
COL1A1P02452 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL1A1P02452 SLBP-205ENST00000488267 987 ntTSL 2 BASIC20.53■□□□□ 0.88
COL1A1P02452 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC20.53■□□□□ 0.88
COL1A1P02452 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC20.53■□□□□ 0.88
COL1A1P02452 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC20.53■□□□□ 0.88
COL1A1P02452 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC20.53■□□□□ 0.88
COL1A1P02452 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC20.53■□□□□ 0.88
COL1A1P02452 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC20.53■□□□□ 0.88
COL1A1P02452 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC20.53■□□□□ 0.88
COL1A1P02452 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL1A1P02452 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
COL1A1P02452 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
COL1A1P02452 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL1A1P02452 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
COL1A1P02452 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL1A1P02452 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC20.52■□□□□ 0.88
COL1A1P02452 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
COL1A1P02452 LINC00896-202ENST00000609602 2128 ntBASIC20.52■□□□□ 0.88
COL1A1P02452 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC20.52■□□□□ 0.88
COL1A1P02452 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC20.52■□□□□ 0.88
COL1A1P02452 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC20.52■□□□□ 0.88
COL1A1P02452 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL1A1P02452 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL1A1P02452 AC002056.1-201ENST00000395613 760 ntBASIC20.52■□□□□ 0.88
COL1A1P02452 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC20.52■□□□□ 0.88
COL1A1P02452 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC20.52■□□□□ 0.88
COL1A1P02452 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC20.52■□□□□ 0.88
COL1A1P02452 NMU-203ENST00000507338 658 ntTSL 3 BASIC20.52■□□□□ 0.88
COL1A1P02452 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
COL1A1P02452 AL135744.1-201ENST00000565098 629 ntBASIC20.52■□□□□ 0.88
COL1A1P02452 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
COL1A1P02452 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC20.52■□□□□ 0.88
COL1A1P02452 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL1A1P02452 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
COL1A1P02452 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC20.52■□□□□ 0.88
COL1A1P02452 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL1A1P02452 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL1A1P02452 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC20.52■□□□□ 0.88
COL1A1P02452 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL1A1P02452 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
COL1A1P02452 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC20.52■□□□□ 0.87
COL1A1P02452 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
COL1A1P02452 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
COL1A1P02452 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC20.52■□□□□ 0.87
COL1A1P02452 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL1A1P02452 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL1A1P02452 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC20.51■□□□□ 0.87
COL1A1P02452 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
COL1A1P02452 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
COL1A1P02452 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL1A1P02452 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL1A1P02452 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL1A1P02452 PMS2P4-201ENST00000412466 1052 ntBASIC20.51■□□□□ 0.87
COL1A1P02452 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
COL1A1P02452 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC20.51■□□□□ 0.87
COL1A1P02452 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
COL1A1P02452 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC20.51■□□□□ 0.87
COL1A1P02452 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
COL1A1P02452 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC20.51■□□□□ 0.87
COL1A1P02452 AL009183.1-201ENST00000603760 355 ntBASIC20.51■□□□□ 0.87
COL1A1P02452 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL1A1P02452 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL1A1P02452 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL1A1P02452 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL1A1P02452 AL353732.1-201ENST00000569618 1459 ntBASIC20.51■□□□□ 0.87
COL1A1P02452 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
COL1A1P02452 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
COL1A1P02452 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL1A1P02452 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
COL1A1P02452 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL1A1P02452 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL1A1P02452 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL1A1P02452 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
COL1A1P02452 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL1A1P02452 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL1A1P02452 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC20.5■□□□□ 0.87
COL1A1P02452 AC092474.2-201ENST00000424288 719 ntBASIC20.5■□□□□ 0.87
COL1A1P02452 GATB-205ENST00000508611 605 ntTSL 2 BASIC20.5■□□□□ 0.87
COL1A1P02452 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL1A1P02452 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
COL1A1P02452 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC20.5■□□□□ 0.87
COL1A1P02452 AQP6-203ENST00000551733 849 ntTSL 3 BASIC20.5■□□□□ 0.87
COL1A1P02452 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC20.5■□□□□ 0.87
COL1A1P02452 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms