Protein–RNA interactions for Protein: Q00578

SSL2, General transcription and DNA repair factor IIH helicase subunit XPB, yeastyeast

Predictions only

Length 843 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SSL2Q00578 YHL017WYHL017W 1599 nt7.08□□□□□ -1.28
SSL2Q00578 PEX3YDR329C 1326 nt7.08□□□□□ -1.28
SSL2Q00578 PRP24YMR268C 1335 nt7.08□□□□□ -1.28
SSL2Q00578 LCB3YJL134W 1230 nt7.08□□□□□ -1.28
SSL2Q00578 YKR045CYKR045C 552 nt7.08□□□□□ -1.28
SSL2Q00578 ICT1YLR099C 1185 nt7.08□□□□□ -1.28
SSL2Q00578 ECM31YBR176W 939 nt7.08□□□□□ -1.28
SSL2Q00578 YBR226CYBR226C 411 nt7.08□□□□□ -1.28
SSL2Q00578 MEH1YKR007W 555 nt7.07□□□□□ -1.28
SSL2Q00578 LCL3YGL085W 825 nt7.06□□□□□ -1.28
SSL2Q00578 RPL21AYBR191W 483 nt7.06□□□□□ -1.28
SSL2Q00578 YBR284WYBR284W 2394 nt7.05□□□□□ -1.28
SSL2Q00578 ASF1YJL115W 840 nt7.05□□□□□ -1.28
SSL2Q00578 HOC1YJR075W 1191 nt7.05□□□□□ -1.28
SSL2Q00578 PUS4YNL292W 1212 nt7.05□□□□□ -1.28
SSL2Q00578 SEM1YDR363W-A 270 nt7.04□□□□□ -1.28
SSL2Q00578 PPM1YDR435C 987 nt7.04□□□□□ -1.28
SSL2Q00578 FMO1YHR176W 1299 nt7.04□□□□□ -1.28
SSL2Q00578 HMS2YJR147W 1077 nt7.03□□□□□ -1.28
SSL2Q00578 NMD5YJR132W 3147 nt7.03□□□□□ -1.28
SSL2Q00578 PTC3YBL056W 1407 nt7.02□□□□□ -1.29
SSL2Q00578 BUG1YDL099W 1026 nt7.02□□□□□ -1.29
SSL2Q00578 MRPL1YDR116C 858 nt7.02□□□□□ -1.29
SSL2Q00578 LIA1YJR070C 978 nt7.02□□□□□ -1.29
SSL2Q00578 TSR2YLR435W 618 nt7.02□□□□□ -1.29
SSL2Q00578 YDR514CYDR514C 1452 nt7.02□□□□□ -1.29
SSL2Q00578 JIP4YDR475C 2631 nt7.01□□□□□ -1.29
SSL2Q00578 TPK1YJL164C 1194 nt7.01□□□□□ -1.29
SSL2Q00578 RUF23RUF23 254 nt7.01□□□□□ -1.29
SSL2Q00578 SGF29YCL010C 780 nt7.01□□□□□ -1.29
SSL2Q00578 CNE1YAL058W 1509 nt7.01□□□□□ -1.29
SSL2Q00578 SAL1YNL083W 1485 nt7□□□□□ -1.29
SSL2Q00578 EEB1YPL095C 1371 nt7□□□□□ -1.29
SSL2Q00578 YMR119W-AYMR119W-A 375 nt7□□□□□ -1.29
SSL2Q00578 YCK1YHR135C 1617 nt7□□□□□ -1.29
SSL2Q00578 PPT1YGR123C 1542 nt6.99□□□□□ -1.29
SSL2Q00578 TKL2YBR117C 2046 nt6.99□□□□□ -1.29
SSL2Q00578 NOG2YNR053C 1461 nt6.98□□□□□ -1.29
SSL2Q00578 SKI2YLR398C 3864 nt6.98□□□□□ -1.29
SSL2Q00578 PLB3YOL011W 2061 nt6.98□□□□□ -1.29
SSL2Q00578 COX9YDL067C 180 nt6.98□□□□□ -1.29
SSL2Q00578 MHT1YLL062C 975 nt6.98□□□□□ -1.29
SSL2Q00578 POX1YGL205W 2247 nt6.98□□□□□ -1.29
SSL2Q00578 MCH1YDL054C 1461 nt6.98□□□□□ -1.29
SSL2Q00578 GLC8YMR311C 690 nt6.97□□□□□ -1.29
SSL2Q00578 YNL017CYNL017C 339 nt6.97□□□□□ -1.29
SSL2Q00578 AST1YBL069W 1290 nt6.97□□□□□ -1.29
SSL2Q00578 PYK2YOR347C 1521 nt6.96□□□□□ -1.29
SSL2Q00578 HOS2YGL194C 1359 nt6.96□□□□□ -1.29
SSL2Q00578 MRPL35YDR322W 1104 nt6.96□□□□□ -1.3
SSL2Q00578 YHR070C-AYHR070C-A 411 nt6.96□□□□□ -1.3
SSL2Q00578 YJL211CYJL211C 444 nt6.96□□□□□ -1.3
SSL2Q00578 COS10YNR075W 1125 nt6.96□□□□□ -1.3
SSL2Q00578 YMC1YPR058W 924 nt6.96□□□□□ -1.3
SSL2Q00578 RGT2YDL138W 2292 nt6.96□□□□□ -1.3
SSL2Q00578 PET112YBL080C 1626 nt6.95□□□□□ -1.3
SSL2Q00578 POP5YAL033W 522 nt6.95□□□□□ -1.3
SSL2Q00578 GUD1YDL238C 1470 nt6.95□□□□□ -1.3
SSL2Q00578 MRC1YCL061C 3291 nt6.95□□□□□ -1.3
SSL2Q00578 YOS9YDR057W 1629 nt6.94□□□□□ -1.3
SSL2Q00578 CYC8YBR112C 2901 nt6.94□□□□□ -1.3
SSL2Q00578 SSK22YCR073C 3996 nt6.94□□□□□ -1.3
SSL2Q00578 PGK1YCR012W 1251 nt6.94□□□□□ -1.3
SSL2Q00578 SDH4YDR178W 546 nt6.94□□□□□ -1.3
SSL2Q00578 FPR3YML074C 1236 nt6.94□□□□□ -1.3
SSL2Q00578 TAF9YMR236W 474 nt6.94□□□□□ -1.3
SSL2Q00578 ILV6YCL009C 930 nt6.94□□□□□ -1.3
SSL2Q00578 CYS4YGR155W 1524 nt6.94□□□□□ -1.3
SSL2Q00578 ESC8YOL017W 2145 nt6.94□□□□□ -1.3
SSL2Q00578 ASN2YGR124W 1719 nt6.93□□□□□ -1.3
SSL2Q00578 EFT2YDR385W 2529 nt6.93□□□□□ -1.3
SSL2Q00578 EFT1YOR133W 2529 nt6.93□□□□□ -1.3
SSL2Q00578 RRP46YGR095C 672 nt6.93□□□□□ -1.3
SSL2Q00578 RPS3YNL178W 723 nt6.93□□□□□ -1.3
SSL2Q00578 AAD14YNL331C 1131 nt6.93□□□□□ -1.3
SSL2Q00578 TEP1YNL128W 1305 nt6.93□□□□□ -1.3
SSL2Q00578 HXT2YMR011W 1626 nt6.93□□□□□ -1.3
SSL2Q00578 YFL042CYFL042C 2025 nt6.93□□□□□ -1.3
SSL2Q00578 VPS5YOR069W 2028 nt6.93□□□□□ -1.3
SSL2Q00578 GPD1YDL022W 1176 nt6.92□□□□□ -1.3
SSL2Q00578 URA1YKL216W 945 nt6.92□□□□□ -1.3
SSL2Q00578 PKC1YBL105C 3456 nt6.92□□□□□ -1.3
SSL2Q00578 ILV1YER086W 1731 nt6.92□□□□□ -1.3
SSL2Q00578 ERG8YMR220W 1356 nt6.92□□□□□ -1.3
SSL2Q00578 BUD9YGR041W 1644 nt6.91□□□□□ -1.3
SSL2Q00578 GCG1YER163C 699 nt6.91□□□□□ -1.3
SSL2Q00578 YGL235WYGL235W 537 nt6.91□□□□□ -1.3
SSL2Q00578 OM45YIL136W 1182 nt6.91□□□□□ -1.3
SSL2Q00578 RMD9YGL107C 1941 nt6.9□□□□□ -1.3
SSL2Q00578 LAG2YOL025W 1983 nt6.9□□□□□ -1.3
SSL2Q00578 OAC1YKL120W 975 nt6.9□□□□□ -1.3
SSL2Q00578 ACS1YAL054C 2142 nt6.9□□□□□ -1.3
SSL2Q00578 SKG1YKR100C 1068 nt6.9□□□□□ -1.3
SSL2Q00578 EXG1YLR300W 1347 nt6.9□□□□□ -1.3
SSL2Q00578 KEL1YHR158C 3495 nt6.89□□□□□ -1.31
SSL2Q00578 tR(ACG)DtR(ACG)D 73 nt6.89□□□□□ -1.31
SSL2Q00578 tR(ACG)EtR(ACG)E 73 nt6.89□□□□□ -1.31
SSL2Q00578 tR(ACG)KtR(ACG)K 73 nt6.89□□□□□ -1.31
SSL2Q00578 tR(ACG)LtR(ACG)L 73 nt6.89□□□□□ -1.31
SSL2Q00578 tR(ACG)OtR(ACG)O 73 nt6.89□□□□□ -1.31
Retrieved 100 of 7,029 protein–RNA pairs in 14.1 ms