Protein–RNA interactions for Protein: P62857

RPS28, 40S ribosomal protein S28, humanhuman

Known RBP Predictions only

Length 69 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28P62857 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
RPS28P62857 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RPS28P62857 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC14.35□□□□□ -0.11
RPS28P62857 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
RPS28P62857 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC14.35□□□□□ -0.11
RPS28P62857 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RPS28P62857 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RPS28P62857 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RPS28P62857 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC14.35□□□□□ -0.11
RPS28P62857 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC14.35□□□□□ -0.11
RPS28P62857 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RPS28P62857 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC14.35□□□□□ -0.11
RPS28P62857 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RPS28P62857 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC14.35□□□□□ -0.11
RPS28P62857 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RPS28P62857 EML3-217ENST00000531557 2509 ntTSL 5 BASIC14.35□□□□□ -0.11
RPS28P62857 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
RPS28P62857 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RPS28P62857 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC14.34□□□□□ -0.11
RPS28P62857 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
RPS28P62857 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RPS28P62857 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
RPS28P62857 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RPS28P62857 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
RPS28P62857 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC14.34□□□□□ -0.11
RPS28P62857 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
RPS28P62857 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.11
RPS28P62857 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.11
RPS28P62857 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RPS28P62857 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RPS28P62857 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
RPS28P62857 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
RPS28P62857 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
RPS28P62857 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
RPS28P62857 MED17-227ENST00000640521 2047 ntTSL 5 BASIC14.32□□□□□ -0.12
RPS28P62857 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
RPS28P62857 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
RPS28P62857 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC14.31□□□□□ -0.12
RPS28P62857 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC14.31□□□□□ -0.12
RPS28P62857 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RPS28P62857 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC14.31□□□□□ -0.12
RPS28P62857 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
RPS28P62857 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
RPS28P62857 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RPS28P62857 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RPS28P62857 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
RPS28P62857 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RPS28P62857 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
RPS28P62857 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC14.31□□□□□ -0.12
RPS28P62857 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
RPS28P62857 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
RPS28P62857 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
RPS28P62857 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
RPS28P62857 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
RPS28P62857 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
RPS28P62857 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC14.3□□□□□ -0.12
RPS28P62857 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC14.3□□□□□ -0.12
RPS28P62857 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC14.3□□□□□ -0.12
RPS28P62857 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
RPS28P62857 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
RPS28P62857 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RPS28P62857 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RPS28P62857 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
RPS28P62857 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RPS28P62857 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC14.29□□□□□ -0.12
RPS28P62857 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RPS28P62857 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RPS28P62857 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RPS28P62857 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RPS28P62857 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC14.28□□□□□ -0.12
RPS28P62857 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
RPS28P62857 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
RPS28P62857 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
RPS28P62857 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
RPS28P62857 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
RPS28P62857 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC14.27□□□□□ -0.12
RPS28P62857 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC14.27□□□□□ -0.12
RPS28P62857 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC14.27□□□□□ -0.13
RPS28P62857 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC14.27□□□□□ -0.13
RPS28P62857 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
RPS28P62857 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC14.26□□□□□ -0.13
RPS28P62857 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC14.26□□□□□ -0.13
RPS28P62857 DUSP8P5-201ENST00000422884 1815 ntBASIC14.26□□□□□ -0.13
RPS28P62857 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
RPS28P62857 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
RPS28P62857 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
RPS28P62857 STK25-234ENST00000535007 2459 ntTSL 2 BASIC14.25□□□□□ -0.13
RPS28P62857 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC14.25□□□□□ -0.13
RPS28P62857 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RPS28P62857 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
RPS28P62857 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RPS28P62857 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
RPS28P62857 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC14.25□□□□□ -0.13
RPS28P62857 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC14.25□□□□□ -0.13
RPS28P62857 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
RPS28P62857 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
RPS28P62857 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC14.24□□□□□ -0.13
RPS28P62857 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC14.24□□□□□ -0.13
RPS28P62857 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
RPS28P62857 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 104.7 ms