Protein–RNA interactions for Protein: O60609

GFRA3, GDNF family receptor alpha-3, humanhuman

Predictions only

Length 400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA3O60609 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
GFRA3O60609 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
GFRA3O60609 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC24.22■■□□□ 1.47
GFRA3O60609 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
GFRA3O60609 AC090192.1-201ENST00000517740 490 ntBASIC24.22■■□□□ 1.47
GFRA3O60609 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
GFRA3O60609 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
GFRA3O60609 MIR6821-201ENST00000617625 74 ntBASIC24.22■■□□□ 1.47
GFRA3O60609 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC24.21■■□□□ 1.47
GFRA3O60609 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC24.21■■□□□ 1.47
GFRA3O60609 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
GFRA3O60609 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
GFRA3O60609 AL162430.1-201ENST00000480705 870 ntBASIC24.21■■□□□ 1.47
GFRA3O60609 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC24.21■■□□□ 1.47
GFRA3O60609 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC24.2■■□□□ 1.47
GFRA3O60609 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC24.2■■□□□ 1.47
GFRA3O60609 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC24.2■■□□□ 1.46
GFRA3O60609 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC24.2■■□□□ 1.46
GFRA3O60609 SUDS3P1-201ENST00000505831 966 ntBASIC24.19■■□□□ 1.46
GFRA3O60609 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
GFRA3O60609 HYI-206ENST00000372434 1025 ntTSL 5 BASIC24.18■■□□□ 1.46
GFRA3O60609 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
GFRA3O60609 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
GFRA3O60609 MTDHP2-201ENST00000601468 714 ntBASIC24.17■■□□□ 1.46
GFRA3O60609 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
GFRA3O60609 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC24.16■■□□□ 1.46
GFRA3O60609 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
GFRA3O60609 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
GFRA3O60609 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
GFRA3O60609 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC24.16■■□□□ 1.46
GFRA3O60609 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC24.16■■□□□ 1.46
GFRA3O60609 AL031432.3-201ENST00000607698 485 ntBASIC24.16■■□□□ 1.46
GFRA3O60609 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
GFRA3O60609 RARRES2P11-201ENST00000635158 484 ntBASIC24.16■■□□□ 1.46
GFRA3O60609 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
GFRA3O60609 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
GFRA3O60609 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC24.15■■□□□ 1.46
GFRA3O60609 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC24.15■■□□□ 1.46
GFRA3O60609 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
GFRA3O60609 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC24.15■■□□□ 1.46
GFRA3O60609 AL512631.2-201ENST00000604634 923 ntBASIC24.15■■□□□ 1.46
GFRA3O60609 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
GFRA3O60609 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
GFRA3O60609 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
GFRA3O60609 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
GFRA3O60609 AK3-203ENST00000447596 705 ntTSL 2 BASIC24.14■■□□□ 1.45
GFRA3O60609 QDPR-206ENST00000508623 601 ntTSL 3 BASIC24.14■■□□□ 1.45
GFRA3O60609 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC24.14■■□□□ 1.45
GFRA3O60609 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
GFRA3O60609 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
GFRA3O60609 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC24.13■■□□□ 1.45
GFRA3O60609 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC24.13■■□□□ 1.45
GFRA3O60609 AC097381.1-201ENST00000429019 1296 ntBASIC24.13■■□□□ 1.45
GFRA3O60609 AC105265.2-201ENST00000467189 838 ntBASIC24.13■■□□□ 1.45
GFRA3O60609 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC24.13■■□□□ 1.45
GFRA3O60609 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC24.13■■□□□ 1.45
GFRA3O60609 LSM4-201ENST00000252816 986 ntTSL 2 BASIC24.12■■□□□ 1.45
GFRA3O60609 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC24.12■■□□□ 1.45
GFRA3O60609 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC24.12■■□□□ 1.45
GFRA3O60609 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
GFRA3O60609 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC24.11■■□□□ 1.45
GFRA3O60609 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC24.11■■□□□ 1.45
GFRA3O60609 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC24.11■■□□□ 1.45
GFRA3O60609 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
GFRA3O60609 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
GFRA3O60609 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
GFRA3O60609 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
GFRA3O60609 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC24.1■■□□□ 1.45
GFRA3O60609 AC087623.3-201ENST00000607047 1098 ntBASIC24.1■■□□□ 1.45
GFRA3O60609 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
GFRA3O60609 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC24.09■■□□□ 1.45
GFRA3O60609 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC24.09■■□□□ 1.45
GFRA3O60609 AC120024.1-201ENST00000562672 995 ntBASIC24.08■■□□□ 1.45
GFRA3O60609 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC24.08■■□□□ 1.45
GFRA3O60609 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
GFRA3O60609 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC24.08■■□□□ 1.45
GFRA3O60609 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
GFRA3O60609 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC24.07■■□□□ 1.44
GFRA3O60609 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC24.06■■□□□ 1.44
GFRA3O60609 UNC93B3-201ENST00000308076 687 ntBASIC24.06■■□□□ 1.44
GFRA3O60609 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC24.06■■□□□ 1.44
GFRA3O60609 PLD4-205ENST00000553861 667 ntTSL 2 BASIC24.06■■□□□ 1.44
GFRA3O60609 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC24.06■■□□□ 1.44
GFRA3O60609 AL136162.1-201ENST00000607711 1078 ntBASIC24.06■■□□□ 1.44
GFRA3O60609 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC24.06■■□□□ 1.44
GFRA3O60609 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
GFRA3O60609 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC24.05■■□□□ 1.44
GFRA3O60609 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC24.05■■□□□ 1.44
GFRA3O60609 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC24.05■■□□□ 1.44
GFRA3O60609 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC24.04■■□□□ 1.44
GFRA3O60609 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC24.04■■□□□ 1.44
GFRA3O60609 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC24.04■■□□□ 1.44
GFRA3O60609 AL355001.2-201ENST00000620617 1191 ntBASIC24.04■■□□□ 1.44
GFRA3O60609 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
GFRA3O60609 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
GFRA3O60609 AL359504.2-201ENST00000605506 1601 ntBASIC24.03■■□□□ 1.44
GFRA3O60609 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
GFRA3O60609 EDA-201ENST00000338901 1233 ntBASIC24.03■■□□□ 1.44
GFRA3O60609 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
GFRA3O60609 EXOG-217ENST00000630638 197 ntTSL 5 BASIC24.03■■□□□ 1.44
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms