Protein–RNA interactions for Protein: A6NM62

LRRC53, Leucine-rich repeat-containing protein 53, humanhuman

Predictions only

Length 1,247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC53A6NM62 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
LRRC53A6NM62 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC26.1■■□□□ 1.77
LRRC53A6NM62 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC26.1■■□□□ 1.77
LRRC53A6NM62 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC26.09■■□□□ 1.77
LRRC53A6NM62 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
LRRC53A6NM62 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC26.09■■□□□ 1.77
LRRC53A6NM62 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC26.08■■□□□ 1.77
LRRC53A6NM62 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC26.08■■□□□ 1.77
LRRC53A6NM62 GDI1-215ENST00000630693 786 ntTSL 4 BASIC26.08■■□□□ 1.77
LRRC53A6NM62 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC26.08■■□□□ 1.77
LRRC53A6NM62 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
LRRC53A6NM62 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC26.08■■□□□ 1.77
LRRC53A6NM62 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
LRRC53A6NM62 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
LRRC53A6NM62 MIR3648-2-201ENST00000581792 180 ntBASIC26.07■■□□□ 1.76
LRRC53A6NM62 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC26.07■■□□□ 1.76
LRRC53A6NM62 MIR3648-1-201ENST00000615959 180 ntBASIC26.07■■□□□ 1.76
LRRC53A6NM62 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC26.07■■□□□ 1.76
LRRC53A6NM62 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC26.07■■□□□ 1.76
LRRC53A6NM62 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC26.07■■□□□ 1.76
LRRC53A6NM62 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC26.07■■□□□ 1.76
LRRC53A6NM62 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC26.07■■□□□ 1.76
LRRC53A6NM62 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC26.06■■□□□ 1.76
LRRC53A6NM62 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
LRRC53A6NM62 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC26.06■■□□□ 1.76
LRRC53A6NM62 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
LRRC53A6NM62 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC26.06■■□□□ 1.76
LRRC53A6NM62 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC26.06■■□□□ 1.76
LRRC53A6NM62 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC26.06■■□□□ 1.76
LRRC53A6NM62 AC093323.1-202ENST00000635031 2045 ntBASIC26.06■■□□□ 1.76
LRRC53A6NM62 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
LRRC53A6NM62 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
LRRC53A6NM62 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC26.05■■□□□ 1.76
LRRC53A6NM62 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
LRRC53A6NM62 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC26.05■■□□□ 1.76
LRRC53A6NM62 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
LRRC53A6NM62 MED17-227ENST00000640521 2047 ntTSL 5 BASIC26.04■■□□□ 1.76
LRRC53A6NM62 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC26.04■■□□□ 1.76
LRRC53A6NM62 AC142381.3-201ENST00000568208 1670 ntBASIC26.04■■□□□ 1.76
LRRC53A6NM62 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC26.04■■□□□ 1.76
LRRC53A6NM62 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
LRRC53A6NM62 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC26.04■■□□□ 1.76
LRRC53A6NM62 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
LRRC53A6NM62 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
LRRC53A6NM62 MACF1-219ENST00000484793 834 ntTSL 2 BASIC26.03■■□□□ 1.76
LRRC53A6NM62 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
LRRC53A6NM62 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC26.03■■□□□ 1.76
LRRC53A6NM62 AC022211.4-201ENST00000625094 2161 ntBASIC26.03■■□□□ 1.76
LRRC53A6NM62 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
LRRC53A6NM62 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC26.02■■□□□ 1.76
LRRC53A6NM62 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
LRRC53A6NM62 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
LRRC53A6NM62 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC26.02■■□□□ 1.76
LRRC53A6NM62 METRNL-202ENST00000570778 967 ntTSL 5 BASIC26.02■■□□□ 1.76
LRRC53A6NM62 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
LRRC53A6NM62 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
LRRC53A6NM62 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
LRRC53A6NM62 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC26.02■■□□□ 1.76
LRRC53A6NM62 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
LRRC53A6NM62 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
LRRC53A6NM62 AC016575.1-201ENST00000607026 382 ntBASIC26.01■■□□□ 1.75
LRRC53A6NM62 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC26.01■■□□□ 1.75
LRRC53A6NM62 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC26■■□□□ 1.75
LRRC53A6NM62 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC26■■□□□ 1.75
LRRC53A6NM62 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC26■■□□□ 1.75
LRRC53A6NM62 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
LRRC53A6NM62 AC126177.7-201ENST00000547904 679 ntBASIC26■■□□□ 1.75
LRRC53A6NM62 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC26■■□□□ 1.75
LRRC53A6NM62 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC25.99■■□□□ 1.75
LRRC53A6NM62 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
LRRC53A6NM62 AC138932.3-201ENST00000567634 1902 ntBASIC25.99■■□□□ 1.75
LRRC53A6NM62 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
LRRC53A6NM62 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
LRRC53A6NM62 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC25.99■■□□□ 1.75
LRRC53A6NM62 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
LRRC53A6NM62 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
LRRC53A6NM62 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC25.98■■□□□ 1.75
LRRC53A6NM62 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC25.98■■□□□ 1.75
LRRC53A6NM62 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC25.97■■□□□ 1.75
LRRC53A6NM62 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC25.97■■□□□ 1.75
LRRC53A6NM62 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC25.97■■□□□ 1.75
LRRC53A6NM62 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC25.96■■□□□ 1.75
LRRC53A6NM62 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC25.96■■□□□ 1.75
LRRC53A6NM62 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC25.96■■□□□ 1.75
LRRC53A6NM62 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
LRRC53A6NM62 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC25.96■■□□□ 1.75
LRRC53A6NM62 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.75
LRRC53A6NM62 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC25.95■■□□□ 1.74
LRRC53A6NM62 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC25.95■■□□□ 1.74
LRRC53A6NM62 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC25.95■■□□□ 1.74
LRRC53A6NM62 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC25.95■■□□□ 1.74
LRRC53A6NM62 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
LRRC53A6NM62 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
LRRC53A6NM62 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
LRRC53A6NM62 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
LRRC53A6NM62 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC25.94■■□□□ 1.74
LRRC53A6NM62 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
LRRC53A6NM62 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
LRRC53A6NM62 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC25.93■■□□□ 1.74
LRRC53A6NM62 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms