Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LIMCH1Q9UPQ0 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LIMCH1Q9UPQ0 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
LIMCH1Q9UPQ0 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC20.31■□□□□ 0.84
LIMCH1Q9UPQ0 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
LIMCH1Q9UPQ0 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LIMCH1Q9UPQ0 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC20.3■□□□□ 0.84
LIMCH1Q9UPQ0 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
LIMCH1Q9UPQ0 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC20.3■□□□□ 0.84
LIMCH1Q9UPQ0 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC20.3■□□□□ 0.84
LIMCH1Q9UPQ0 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LIMCH1Q9UPQ0 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC20.3■□□□□ 0.84
LIMCH1Q9UPQ0 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
LIMCH1Q9UPQ0 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC20.3■□□□□ 0.84
LIMCH1Q9UPQ0 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LIMCH1Q9UPQ0 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LIMCH1Q9UPQ0 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC20.3■□□□□ 0.84
LIMCH1Q9UPQ0 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC20.3■□□□□ 0.84
LIMCH1Q9UPQ0 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
LIMCH1Q9UPQ0 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LIMCH1Q9UPQ0 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
LIMCH1Q9UPQ0 LINC00265-3P-201ENST00000447588 903 ntBASIC20.3■□□□□ 0.84
LIMCH1Q9UPQ0 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC20.3■□□□□ 0.84
LIMCH1Q9UPQ0 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC20.3■□□□□ 0.84
LIMCH1Q9UPQ0 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC20.3■□□□□ 0.84
LIMCH1Q9UPQ0 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LIMCH1Q9UPQ0 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC20.3■□□□□ 0.84
LIMCH1Q9UPQ0 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC20.3■□□□□ 0.84
LIMCH1Q9UPQ0 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC20.3■□□□□ 0.84
LIMCH1Q9UPQ0 AC087388.1-201ENST00000571370 1112 ntBASIC20.3■□□□□ 0.84
LIMCH1Q9UPQ0 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
LIMCH1Q9UPQ0 DBP-204ENST00000599385 709 ntTSL 3 BASIC20.3■□□□□ 0.84
LIMCH1Q9UPQ0 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC20.3■□□□□ 0.84
LIMCH1Q9UPQ0 AL590326.2-201ENST00000625139 305 ntBASIC20.3■□□□□ 0.84
LIMCH1Q9UPQ0 AP000867.4-201ENST00000641616 219 ntBASIC20.3■□□□□ 0.84
LIMCH1Q9UPQ0 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LIMCH1Q9UPQ0 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC20.3■□□□□ 0.84
LIMCH1Q9UPQ0 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC20.3■□□□□ 0.84
LIMCH1Q9UPQ0 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LIMCH1Q9UPQ0 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
LIMCH1Q9UPQ0 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LIMCH1Q9UPQ0 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC20.29■□□□□ 0.84
LIMCH1Q9UPQ0 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC20.29■□□□□ 0.84
LIMCH1Q9UPQ0 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIMCH1Q9UPQ0 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIMCH1Q9UPQ0 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
LIMCH1Q9UPQ0 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIMCH1Q9UPQ0 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIMCH1Q9UPQ0 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC20.29■□□□□ 0.84
LIMCH1Q9UPQ0 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
LIMCH1Q9UPQ0 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC20.29■□□□□ 0.84
LIMCH1Q9UPQ0 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
LIMCH1Q9UPQ0 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
LIMCH1Q9UPQ0 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC20.29■□□□□ 0.84
LIMCH1Q9UPQ0 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIMCH1Q9UPQ0 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC20.29■□□□□ 0.84
LIMCH1Q9UPQ0 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
LIMCH1Q9UPQ0 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC20.29■□□□□ 0.84
LIMCH1Q9UPQ0 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC20.29■□□□□ 0.84
LIMCH1Q9UPQ0 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC20.29■□□□□ 0.84
LIMCH1Q9UPQ0 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC20.29■□□□□ 0.84
LIMCH1Q9UPQ0 MIR3180-1-201ENST00000580374 94 ntBASIC20.29■□□□□ 0.84
LIMCH1Q9UPQ0 MIR3180-3-201ENST00000584616 94 ntBASIC20.29■□□□□ 0.84
LIMCH1Q9UPQ0 IL11-204ENST00000590625 1028 ntTSL 2 BASIC20.29■□□□□ 0.84
LIMCH1Q9UPQ0 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
LIMCH1Q9UPQ0 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIMCH1Q9UPQ0 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC20.29■□□□□ 0.84
LIMCH1Q9UPQ0 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIMCH1Q9UPQ0 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC20.29■□□□□ 0.84
LIMCH1Q9UPQ0 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
LIMCH1Q9UPQ0 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIMCH1Q9UPQ0 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
LIMCH1Q9UPQ0 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
LIMCH1Q9UPQ0 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LIMCH1Q9UPQ0 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC20.28■□□□□ 0.84
LIMCH1Q9UPQ0 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LIMCH1Q9UPQ0 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC20.28■□□□□ 0.84
LIMCH1Q9UPQ0 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC20.28■□□□□ 0.84
LIMCH1Q9UPQ0 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
LIMCH1Q9UPQ0 AC148477.5-201ENST00000625164 1645 ntBASIC20.28■□□□□ 0.84
LIMCH1Q9UPQ0 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LIMCH1Q9UPQ0 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC20.28■□□□□ 0.84
LIMCH1Q9UPQ0 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
LIMCH1Q9UPQ0 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC20.28■□□□□ 0.84
LIMCH1Q9UPQ0 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC20.28■□□□□ 0.84
LIMCH1Q9UPQ0 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
LIMCH1Q9UPQ0 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
LIMCH1Q9UPQ0 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC20.28■□□□□ 0.84
LIMCH1Q9UPQ0 AC114341.1-201ENST00000618070 349 ntBASIC20.28■□□□□ 0.84
LIMCH1Q9UPQ0 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LIMCH1Q9UPQ0 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC20.28■□□□□ 0.84
LIMCH1Q9UPQ0 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC20.28■□□□□ 0.84
LIMCH1Q9UPQ0 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LIMCH1Q9UPQ0 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC20.28■□□□□ 0.84
LIMCH1Q9UPQ0 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC20.28■□□□□ 0.84
LIMCH1Q9UPQ0 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LIMCH1Q9UPQ0 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LIMCH1Q9UPQ0 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
LIMCH1Q9UPQ0 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC20.27■□□□□ 0.84
LIMCH1Q9UPQ0 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC20.27■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 70.2 ms