Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC17.9■□□□□ 0.46
AP4E1Q9UPM8 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC17.9■□□□□ 0.46
AP4E1Q9UPM8 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
AP4E1Q9UPM8 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
AP4E1Q9UPM8 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC17.89■□□□□ 0.46
AP4E1Q9UPM8 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
AP4E1Q9UPM8 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC17.89■□□□□ 0.46
AP4E1Q9UPM8 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
AP4E1Q9UPM8 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
AP4E1Q9UPM8 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
AP4E1Q9UPM8 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
AP4E1Q9UPM8 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
AP4E1Q9UPM8 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
AP4E1Q9UPM8 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
AP4E1Q9UPM8 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
AP4E1Q9UPM8 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
AP4E1Q9UPM8 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC17.89■□□□□ 0.45
AP4E1Q9UPM8 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
AP4E1Q9UPM8 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC17.89■□□□□ 0.45
AP4E1Q9UPM8 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
AP4E1Q9UPM8 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC17.89■□□□□ 0.45
AP4E1Q9UPM8 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC17.89■□□□□ 0.45
AP4E1Q9UPM8 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
AP4E1Q9UPM8 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
AP4E1Q9UPM8 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
AP4E1Q9UPM8 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
AP4E1Q9UPM8 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
AP4E1Q9UPM8 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
AP4E1Q9UPM8 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
AP4E1Q9UPM8 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
AP4E1Q9UPM8 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
AP4E1Q9UPM8 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
AP4E1Q9UPM8 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
AP4E1Q9UPM8 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC17.89■□□□□ 0.45
AP4E1Q9UPM8 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
AP4E1Q9UPM8 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
AP4E1Q9UPM8 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
AP4E1Q9UPM8 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
AP4E1Q9UPM8 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
AP4E1Q9UPM8 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
AP4E1Q9UPM8 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC17.89■□□□□ 0.45
AP4E1Q9UPM8 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
AP4E1Q9UPM8 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
AP4E1Q9UPM8 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
AP4E1Q9UPM8 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
AP4E1Q9UPM8 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC17.88■□□□□ 0.45
AP4E1Q9UPM8 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
AP4E1Q9UPM8 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC17.88■□□□□ 0.45
AP4E1Q9UPM8 SCARNA2-201ENST00000458748 420 ntBASIC17.88■□□□□ 0.45
AP4E1Q9UPM8 TOLLIP-AS1-201ENST00000530897 939 ntBASIC17.88■□□□□ 0.45
AP4E1Q9UPM8 BMF-207ENST00000559701 630 ntTSL 3 BASIC17.88■□□□□ 0.45
AP4E1Q9UPM8 IRF8-202ENST00000562492 946 ntTSL 3 BASIC17.88■□□□□ 0.45
AP4E1Q9UPM8 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
AP4E1Q9UPM8 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC17.88■□□□□ 0.45
AP4E1Q9UPM8 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
AP4E1Q9UPM8 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
AP4E1Q9UPM8 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC17.88■□□□□ 0.45
AP4E1Q9UPM8 NCF1C-201ENST00000438382 1427 ntBASIC17.88■□□□□ 0.45
AP4E1Q9UPM8 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
AP4E1Q9UPM8 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
AP4E1Q9UPM8 GPR89P-201ENST00000407924 1495 ntBASIC17.88■□□□□ 0.45
AP4E1Q9UPM8 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
AP4E1Q9UPM8 AL121761.2-201ENST00000598007 1648 ntBASIC17.87■□□□□ 0.45
AP4E1Q9UPM8 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
AP4E1Q9UPM8 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC17.87■□□□□ 0.45
AP4E1Q9UPM8 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC17.87■□□□□ 0.45
AP4E1Q9UPM8 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
AP4E1Q9UPM8 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
AP4E1Q9UPM8 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
AP4E1Q9UPM8 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
AP4E1Q9UPM8 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
AP4E1Q9UPM8 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
AP4E1Q9UPM8 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
AP4E1Q9UPM8 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC17.87■□□□□ 0.45
AP4E1Q9UPM8 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
AP4E1Q9UPM8 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
AP4E1Q9UPM8 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
AP4E1Q9UPM8 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC17.87■□□□□ 0.45
AP4E1Q9UPM8 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC17.87■□□□□ 0.45
AP4E1Q9UPM8 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC17.87■□□□□ 0.45
AP4E1Q9UPM8 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
AP4E1Q9UPM8 AC064862.7-201ENST00000604520 867 ntBASIC17.87■□□□□ 0.45
AP4E1Q9UPM8 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC17.87■□□□□ 0.45
AP4E1Q9UPM8 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
AP4E1Q9UPM8 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
AP4E1Q9UPM8 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
AP4E1Q9UPM8 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC17.87■□□□□ 0.45
AP4E1Q9UPM8 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
AP4E1Q9UPM8 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
AP4E1Q9UPM8 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC17.87■□□□□ 0.45
AP4E1Q9UPM8 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC17.87■□□□□ 0.45
AP4E1Q9UPM8 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
AP4E1Q9UPM8 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC17.87■□□□□ 0.45
AP4E1Q9UPM8 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
AP4E1Q9UPM8 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
AP4E1Q9UPM8 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC17.87■□□□□ 0.45
AP4E1Q9UPM8 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
AP4E1Q9UPM8 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC17.87■□□□□ 0.45
AP4E1Q9UPM8 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
AP4E1Q9UPM8 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms