Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC39Q9UFE4 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC39Q9UFE4 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC39Q9UFE4 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC39Q9UFE4 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC39Q9UFE4 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC39Q9UFE4 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC39Q9UFE4 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC39Q9UFE4 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC20.01■□□□□ 0.79
CCDC39Q9UFE4 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC39Q9UFE4 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC39Q9UFE4 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC39Q9UFE4 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC20.01■□□□□ 0.79
CCDC39Q9UFE4 BX276092.7-203ENST00000637198 1536 ntBASIC20.01■□□□□ 0.79
CCDC39Q9UFE4 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC20.01■□□□□ 0.79
CCDC39Q9UFE4 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC39Q9UFE4 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC20.01■□□□□ 0.79
CCDC39Q9UFE4 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC39Q9UFE4 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC39Q9UFE4 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC20■□□□□ 0.79
CCDC39Q9UFE4 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
CCDC39Q9UFE4 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC20■□□□□ 0.79
CCDC39Q9UFE4 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC20■□□□□ 0.79
CCDC39Q9UFE4 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC20■□□□□ 0.79
CCDC39Q9UFE4 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC20■□□□□ 0.79
CCDC39Q9UFE4 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC20■□□□□ 0.79
CCDC39Q9UFE4 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC20■□□□□ 0.79
CCDC39Q9UFE4 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC20■□□□□ 0.79
CCDC39Q9UFE4 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC20■□□□□ 0.79
CCDC39Q9UFE4 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC39Q9UFE4 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC20■□□□□ 0.79
CCDC39Q9UFE4 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC20■□□□□ 0.79
CCDC39Q9UFE4 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC20■□□□□ 0.79
CCDC39Q9UFE4 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC20■□□□□ 0.79
CCDC39Q9UFE4 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC20■□□□□ 0.79
CCDC39Q9UFE4 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC20■□□□□ 0.79
CCDC39Q9UFE4 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC20■□□□□ 0.79
CCDC39Q9UFE4 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC39Q9UFE4 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC39Q9UFE4 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
CCDC39Q9UFE4 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
CCDC39Q9UFE4 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC20■□□□□ 0.79
CCDC39Q9UFE4 LINC00304-203ENST00000565008 1864 ntBASIC20■□□□□ 0.79
CCDC39Q9UFE4 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC20■□□□□ 0.79
CCDC39Q9UFE4 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC20■□□□□ 0.79
CCDC39Q9UFE4 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
CCDC39Q9UFE4 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC39Q9UFE4 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC39Q9UFE4 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC39Q9UFE4 HLA-J-201ENST00000462773 1622 ntBASIC19.99■□□□□ 0.79
CCDC39Q9UFE4 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC39Q9UFE4 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC19.99■□□□□ 0.79
CCDC39Q9UFE4 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC19.99■□□□□ 0.79
CCDC39Q9UFE4 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC39Q9UFE4 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC39Q9UFE4 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC39Q9UFE4 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC39Q9UFE4 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC39Q9UFE4 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC39Q9UFE4 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC19.99■□□□□ 0.79
CCDC39Q9UFE4 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC19.99■□□□□ 0.79
CCDC39Q9UFE4 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC39Q9UFE4 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC19.99■□□□□ 0.79
CCDC39Q9UFE4 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
CCDC39Q9UFE4 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
CCDC39Q9UFE4 AC090616.6-201ENST00000582640 721 ntBASIC19.99■□□□□ 0.79
CCDC39Q9UFE4 AL590326.2-201ENST00000625139 305 ntBASIC19.99■□□□□ 0.79
CCDC39Q9UFE4 VPS72-207ENST00000640458 689 ntTSL 5 BASIC19.99■□□□□ 0.79
CCDC39Q9UFE4 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC39Q9UFE4 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC39Q9UFE4 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC19.99■□□□□ 0.79
CCDC39Q9UFE4 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC19.99■□□□□ 0.79
CCDC39Q9UFE4 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC39Q9UFE4 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC19.99■□□□□ 0.79
CCDC39Q9UFE4 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC39Q9UFE4 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC39Q9UFE4 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC19.99■□□□□ 0.79
CCDC39Q9UFE4 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
CCDC39Q9UFE4 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC39Q9UFE4 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC39Q9UFE4 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC39Q9UFE4 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
CCDC39Q9UFE4 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC39Q9UFE4 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC39Q9UFE4 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC39Q9UFE4 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC39Q9UFE4 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
CCDC39Q9UFE4 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC19.98■□□□□ 0.79
CCDC39Q9UFE4 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC39Q9UFE4 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
CCDC39Q9UFE4 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC39Q9UFE4 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC39Q9UFE4 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC39Q9UFE4 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC19.98■□□□□ 0.79
CCDC39Q9UFE4 KRT8P26-201ENST00000534154 1276 ntBASIC19.98■□□□□ 0.79
CCDC39Q9UFE4 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC19.98■□□□□ 0.79
CCDC39Q9UFE4 CD320-202ENST00000537716 1119 ntTSL 2 BASIC19.98■□□□□ 0.79
CCDC39Q9UFE4 IGHV3-41-201ENST00000613121 348 ntBASIC19.98■□□□□ 0.79
CCDC39Q9UFE4 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC39Q9UFE4 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms