Protein–RNA interactions for Protein: Q9P0L0

VAPA, Vesicle-associated membrane protein-associated protein A, humanhuman

Predictions only

Length 249 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VAPAQ9P0L0 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VAPAQ9P0L0 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC16.31■□□□□ 0.2
VAPAQ9P0L0 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VAPAQ9P0L0 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
VAPAQ9P0L0 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
VAPAQ9P0L0 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC16.31■□□□□ 0.2
VAPAQ9P0L0 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC16.31■□□□□ 0.2
VAPAQ9P0L0 AL353593.2-201ENST00000602529 1483 ntBASIC16.31■□□□□ 0.2
VAPAQ9P0L0 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC16.31■□□□□ 0.2
VAPAQ9P0L0 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VAPAQ9P0L0 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
VAPAQ9P0L0 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
VAPAQ9P0L0 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VAPAQ9P0L0 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VAPAQ9P0L0 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VAPAQ9P0L0 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC16.31■□□□□ 0.2
VAPAQ9P0L0 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC16.31■□□□□ 0.2
VAPAQ9P0L0 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC16.31■□□□□ 0.2
VAPAQ9P0L0 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VAPAQ9P0L0 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VAPAQ9P0L0 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC16.31■□□□□ 0.2
VAPAQ9P0L0 AL592071.1-201ENST00000611956 408 ntBASIC16.31■□□□□ 0.2
VAPAQ9P0L0 AC124864.1-201ENST00000623408 392 ntBASIC16.31■□□□□ 0.2
VAPAQ9P0L0 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
VAPAQ9P0L0 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VAPAQ9P0L0 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VAPAQ9P0L0 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VAPAQ9P0L0 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VAPAQ9P0L0 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC16.31■□□□□ 0.2
VAPAQ9P0L0 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC16.31■□□□□ 0.2
VAPAQ9P0L0 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VAPAQ9P0L0 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
VAPAQ9P0L0 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VAPAQ9P0L0 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VAPAQ9P0L0 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VAPAQ9P0L0 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VAPAQ9P0L0 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VAPAQ9P0L0 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC16.3■□□□□ 0.2
VAPAQ9P0L0 FUT8-AS1-201ENST00000621019 1521 ntBASIC16.3■□□□□ 0.2
VAPAQ9P0L0 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
VAPAQ9P0L0 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
VAPAQ9P0L0 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VAPAQ9P0L0 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VAPAQ9P0L0 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
VAPAQ9P0L0 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
VAPAQ9P0L0 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VAPAQ9P0L0 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
VAPAQ9P0L0 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VAPAQ9P0L0 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VAPAQ9P0L0 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
VAPAQ9P0L0 FAM220CP-201ENST00000395253 831 ntBASIC16.3■□□□□ 0.2
VAPAQ9P0L0 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
VAPAQ9P0L0 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC16.3■□□□□ 0.2
VAPAQ9P0L0 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC16.3■□□□□ 0.2
VAPAQ9P0L0 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC16.3■□□□□ 0.2
VAPAQ9P0L0 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC16.3■□□□□ 0.2
VAPAQ9P0L0 OR6D1P-203ENST00000641209 4860 ntBASIC16.3■□□□□ 0.2
VAPAQ9P0L0 PCDHB17P-201ENST00000539533 2393 ntBASIC16.3■□□□□ 0.2
VAPAQ9P0L0 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VAPAQ9P0L0 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC16.3■□□□□ 0.2
VAPAQ9P0L0 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC16.3■□□□□ 0.2
VAPAQ9P0L0 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VAPAQ9P0L0 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC16.3■□□□□ 0.2
VAPAQ9P0L0 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VAPAQ9P0L0 AC026691.1-201ENST00000602502 2017 ntBASIC16.29■□□□□ 0.2
VAPAQ9P0L0 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
VAPAQ9P0L0 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
VAPAQ9P0L0 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
VAPAQ9P0L0 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VAPAQ9P0L0 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC16.29■□□□□ 0.2
VAPAQ9P0L0 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VAPAQ9P0L0 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC16.29■□□□□ 0.2
VAPAQ9P0L0 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VAPAQ9P0L0 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VAPAQ9P0L0 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC16.29■□□□□ 0.2
VAPAQ9P0L0 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
VAPAQ9P0L0 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VAPAQ9P0L0 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VAPAQ9P0L0 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VAPAQ9P0L0 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
VAPAQ9P0L0 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC16.29■□□□□ 0.2
VAPAQ9P0L0 AC092647.4-201ENST00000457211 535 ntBASIC16.29■□□□□ 0.2
VAPAQ9P0L0 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC16.29■□□□□ 0.2
VAPAQ9P0L0 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC16.29■□□□□ 0.2
VAPAQ9P0L0 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC16.29■□□□□ 0.2
VAPAQ9P0L0 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC16.29■□□□□ 0.2
VAPAQ9P0L0 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC16.29■□□□□ 0.2
VAPAQ9P0L0 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC16.29■□□□□ 0.2
VAPAQ9P0L0 CLN6-204ENST00000564752 900 ntTSL 3 BASIC16.29■□□□□ 0.2
VAPAQ9P0L0 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
VAPAQ9P0L0 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC16.29■□□□□ 0.2
VAPAQ9P0L0 CLN6-214ENST00000636314 442 ntTSL 3 BASIC16.29■□□□□ 0.2
VAPAQ9P0L0 AC066615.1-201ENST00000640911 628 ntBASIC16.29■□□□□ 0.2
VAPAQ9P0L0 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC16.29■□□□□ 0.2
VAPAQ9P0L0 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
VAPAQ9P0L0 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
VAPAQ9P0L0 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VAPAQ9P0L0 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VAPAQ9P0L0 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VAPAQ9P0L0 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms