Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CHMP1AQ9HD42 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
CHMP1AQ9HD42 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
CHMP1AQ9HD42 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC14.91□□□□□ -0.02
CHMP1AQ9HD42 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC14.91□□□□□ -0.02
CHMP1AQ9HD42 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC14.91□□□□□ -0.02
CHMP1AQ9HD42 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC14.91□□□□□ -0.02
CHMP1AQ9HD42 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
CHMP1AQ9HD42 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
CHMP1AQ9HD42 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
CHMP1AQ9HD42 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CHMP1AQ9HD42 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC14.91□□□□□ -0.02
CHMP1AQ9HD42 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
CHMP1AQ9HD42 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CHMP1AQ9HD42 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC14.91□□□□□ -0.02
CHMP1AQ9HD42 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
CHMP1AQ9HD42 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CHMP1AQ9HD42 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
CHMP1AQ9HD42 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC14.91□□□□□ -0.02
CHMP1AQ9HD42 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CHMP1AQ9HD42 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CHMP1AQ9HD42 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC14.91□□□□□ -0.02
CHMP1AQ9HD42 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC14.91□□□□□ -0.02
CHMP1AQ9HD42 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CHMP1AQ9HD42 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CHMP1AQ9HD42 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
CHMP1AQ9HD42 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
CHMP1AQ9HD42 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CHMP1AQ9HD42 NORAD-201ENST00000565493 5339 ntBASIC14.9□□□□□ -0.02
CHMP1AQ9HD42 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CHMP1AQ9HD42 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
CHMP1AQ9HD42 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CHMP1AQ9HD42 HES2-202ENST00000377836 507 ntTSL 2 BASIC14.9□□□□□ -0.02
CHMP1AQ9HD42 TSPY12P-201ENST00000421279 868 ntBASIC14.9□□□□□ -0.02
CHMP1AQ9HD42 LIN28AP1-201ENST00000429574 405 ntBASIC14.9□□□□□ -0.02
CHMP1AQ9HD42 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC14.9□□□□□ -0.02
CHMP1AQ9HD42 ATP5G1P1-201ENST00000448724 379 ntBASIC14.9□□□□□ -0.02
CHMP1AQ9HD42 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CHMP1AQ9HD42 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CHMP1AQ9HD42 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC14.9□□□□□ -0.02
CHMP1AQ9HD42 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC14.9□□□□□ -0.02
CHMP1AQ9HD42 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC14.9□□□□□ -0.02
CHMP1AQ9HD42 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC14.9□□□□□ -0.02
CHMP1AQ9HD42 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC14.9□□□□□ -0.02
CHMP1AQ9HD42 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC14.9□□□□□ -0.02
CHMP1AQ9HD42 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
CHMP1AQ9HD42 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CHMP1AQ9HD42 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
CHMP1AQ9HD42 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
CHMP1AQ9HD42 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CHMP1AQ9HD42 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
CHMP1AQ9HD42 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
CHMP1AQ9HD42 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC14.9□□□□□ -0.02
CHMP1AQ9HD42 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC14.9□□□□□ -0.02
CHMP1AQ9HD42 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CHMP1AQ9HD42 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CHMP1AQ9HD42 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CHMP1AQ9HD42 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CHMP1AQ9HD42 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CHMP1AQ9HD42 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
CHMP1AQ9HD42 REXO1L11P-201ENST00000620964 1927 ntBASIC14.9□□□□□ -0.02
CHMP1AQ9HD42 TSPY26P-202ENST00000565928 3884 ntBASIC14.9□□□□□ -0.02
CHMP1AQ9HD42 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
CHMP1AQ9HD42 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC14.9□□□□□ -0.02
CHMP1AQ9HD42 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC14.89□□□□□ -0.03
CHMP1AQ9HD42 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CHMP1AQ9HD42 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC14.89□□□□□ -0.03
CHMP1AQ9HD42 AC067930.6-201ENST00000623257 4947 ntBASIC14.89□□□□□ -0.03
CHMP1AQ9HD42 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CHMP1AQ9HD42 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
CHMP1AQ9HD42 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC14.89□□□□□ -0.03
CHMP1AQ9HD42 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CHMP1AQ9HD42 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
CHMP1AQ9HD42 KRT8P47-201ENST00000604727 1398 ntBASIC14.89□□□□□ -0.03
CHMP1AQ9HD42 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC14.89□□□□□ -0.03
CHMP1AQ9HD42 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CHMP1AQ9HD42 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC14.89□□□□□ -0.03
CHMP1AQ9HD42 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
CHMP1AQ9HD42 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CHMP1AQ9HD42 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
CHMP1AQ9HD42 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CHMP1AQ9HD42 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
CHMP1AQ9HD42 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
CHMP1AQ9HD42 KRT18P48-201ENST00000434763 852 ntBASIC14.89□□□□□ -0.03
CHMP1AQ9HD42 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
CHMP1AQ9HD42 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
CHMP1AQ9HD42 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC14.89□□□□□ -0.03
CHMP1AQ9HD42 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC14.89□□□□□ -0.03
CHMP1AQ9HD42 TK1-205ENST00000590862 642 ntTSL 3 BASIC14.89□□□□□ -0.03
CHMP1AQ9HD42 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC14.89□□□□□ -0.03
CHMP1AQ9HD42 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC14.89□□□□□ -0.03
CHMP1AQ9HD42 AL136038.4-201ENST00000603606 1261 ntBASIC14.89□□□□□ -0.03
CHMP1AQ9HD42 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC14.89□□□□□ -0.03
CHMP1AQ9HD42 AL023973.1-201ENST00000624619 620 ntBASIC14.89□□□□□ -0.03
CHMP1AQ9HD42 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
CHMP1AQ9HD42 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC14.89□□□□□ -0.03
CHMP1AQ9HD42 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CHMP1AQ9HD42 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CHMP1AQ9HD42 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CHMP1AQ9HD42 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC14.89□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms