Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
TRAIPQ9BWF2 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
TRAIPQ9BWF2 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC18.89■□□□□ 0.61
TRAIPQ9BWF2 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC18.89■□□□□ 0.61
TRAIPQ9BWF2 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC18.89■□□□□ 0.61
TRAIPQ9BWF2 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC18.89■□□□□ 0.61
TRAIPQ9BWF2 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
TRAIPQ9BWF2 REXO1L11P-201ENST00000620964 1927 ntBASIC18.89■□□□□ 0.61
TRAIPQ9BWF2 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
TRAIPQ9BWF2 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TRAIPQ9BWF2 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
TRAIPQ9BWF2 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
TRAIPQ9BWF2 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
TRAIPQ9BWF2 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC18.89■□□□□ 0.61
TRAIPQ9BWF2 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TRAIPQ9BWF2 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TRAIPQ9BWF2 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC18.88■□□□□ 0.61
TRAIPQ9BWF2 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TRAIPQ9BWF2 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
TRAIPQ9BWF2 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TRAIPQ9BWF2 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TRAIPQ9BWF2 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TRAIPQ9BWF2 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC18.88■□□□□ 0.61
TRAIPQ9BWF2 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC18.88■□□□□ 0.61
TRAIPQ9BWF2 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TRAIPQ9BWF2 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
TRAIPQ9BWF2 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
TRAIPQ9BWF2 MRPL20P1-201ENST00000400819 433 ntBASIC18.88■□□□□ 0.61
TRAIPQ9BWF2 AC023274.1-201ENST00000418278 595 ntBASIC18.88■□□□□ 0.61
TRAIPQ9BWF2 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC18.88■□□□□ 0.61
TRAIPQ9BWF2 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
TRAIPQ9BWF2 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TRAIPQ9BWF2 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC18.88■□□□□ 0.61
TRAIPQ9BWF2 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TRAIPQ9BWF2 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TRAIPQ9BWF2 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC18.88■□□□□ 0.61
TRAIPQ9BWF2 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TRAIPQ9BWF2 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
TRAIPQ9BWF2 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC18.88■□□□□ 0.61
TRAIPQ9BWF2 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
TRAIPQ9BWF2 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC18.88■□□□□ 0.61
TRAIPQ9BWF2 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC18.88■□□□□ 0.61
TRAIPQ9BWF2 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TRAIPQ9BWF2 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC18.88■□□□□ 0.61
TRAIPQ9BWF2 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
TRAIPQ9BWF2 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
TRAIPQ9BWF2 FST-202ENST00000396947 2538 ntTSL 5 BASIC18.88■□□□□ 0.61
TRAIPQ9BWF2 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TRAIPQ9BWF2 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TRAIPQ9BWF2 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TRAIPQ9BWF2 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
TRAIPQ9BWF2 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TRAIPQ9BWF2 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
TRAIPQ9BWF2 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TRAIPQ9BWF2 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
TRAIPQ9BWF2 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TRAIPQ9BWF2 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC18.87■□□□□ 0.61
TRAIPQ9BWF2 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
TRAIPQ9BWF2 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC18.87■□□□□ 0.61
TRAIPQ9BWF2 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TRAIPQ9BWF2 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
TRAIPQ9BWF2 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC18.87■□□□□ 0.61
TRAIPQ9BWF2 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
TRAIPQ9BWF2 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC18.87■□□□□ 0.61
TRAIPQ9BWF2 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
TRAIPQ9BWF2 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC18.87■□□□□ 0.61
TRAIPQ9BWF2 MIR4751-201ENST00000578027 74 ntBASIC18.87■□□□□ 0.61
TRAIPQ9BWF2 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC18.87■□□□□ 0.61
TRAIPQ9BWF2 AL691403.2-201ENST00000618460 490 ntBASIC18.87■□□□□ 0.61
TRAIPQ9BWF2 LINC01451-201ENST00000623792 534 ntBASIC18.87■□□□□ 0.61
TRAIPQ9BWF2 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC18.87■□□□□ 0.61
TRAIPQ9BWF2 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TRAIPQ9BWF2 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TRAIPQ9BWF2 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TRAIPQ9BWF2 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
TRAIPQ9BWF2 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
TRAIPQ9BWF2 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TRAIPQ9BWF2 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TRAIPQ9BWF2 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC18.86■□□□□ 0.61
TRAIPQ9BWF2 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC18.86■□□□□ 0.61
TRAIPQ9BWF2 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC18.86■□□□□ 0.61
TRAIPQ9BWF2 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC18.86■□□□□ 0.61
TRAIPQ9BWF2 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
TRAIPQ9BWF2 AL590787.1-201ENST00000568856 1315 ntBASIC18.86■□□□□ 0.61
TRAIPQ9BWF2 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TRAIPQ9BWF2 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
TRAIPQ9BWF2 IGLL3P-201ENST00000412472 434 ntBASIC18.86■□□□□ 0.61
TRAIPQ9BWF2 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC18.86■□□□□ 0.61
TRAIPQ9BWF2 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TRAIPQ9BWF2 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC18.86■□□□□ 0.61
TRAIPQ9BWF2 DHDH-204ENST00000523250 634 ntTSL 5 BASIC18.86■□□□□ 0.61
TRAIPQ9BWF2 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC18.86■□□□□ 0.61
TRAIPQ9BWF2 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC18.86■□□□□ 0.61
TRAIPQ9BWF2 OR7E47P-204ENST00000575924 449 ntBASIC18.86■□□□□ 0.61
TRAIPQ9BWF2 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC18.86■□□□□ 0.61
TRAIPQ9BWF2 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC18.86■□□□□ 0.61
TRAIPQ9BWF2 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC18.86■□□□□ 0.61
TRAIPQ9BWF2 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TRAIPQ9BWF2 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
TRAIPQ9BWF2 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms