Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP28Q96RU2 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
USP28Q96RU2 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP28Q96RU2 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP28Q96RU2 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC19.71■□□□□ 0.75
USP28Q96RU2 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
USP28Q96RU2 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC19.71■□□□□ 0.75
USP28Q96RU2 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC19.71■□□□□ 0.75
USP28Q96RU2 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC19.71■□□□□ 0.75
USP28Q96RU2 AC074051.2-201ENST00000565115 352 ntBASIC19.71■□□□□ 0.75
USP28Q96RU2 IL11-204ENST00000590625 1028 ntTSL 2 BASIC19.71■□□□□ 0.75
USP28Q96RU2 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC19.71■□□□□ 0.75
USP28Q96RU2 DBP-204ENST00000599385 709 ntTSL 3 BASIC19.71■□□□□ 0.75
USP28Q96RU2 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC19.71■□□□□ 0.75
USP28Q96RU2 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC19.71■□□□□ 0.75
USP28Q96RU2 NPAP1P7-201ENST00000613027 823 ntBASIC19.71■□□□□ 0.75
USP28Q96RU2 AL590326.2-201ENST00000625139 305 ntBASIC19.71■□□□□ 0.75
USP28Q96RU2 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP28Q96RU2 AP000867.4-201ENST00000641616 219 ntBASIC19.71■□□□□ 0.75
USP28Q96RU2 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP28Q96RU2 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
USP28Q96RU2 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC19.71■□□□□ 0.75
USP28Q96RU2 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
USP28Q96RU2 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP28Q96RU2 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC19.71■□□□□ 0.75
USP28Q96RU2 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP28Q96RU2 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP28Q96RU2 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC19.71■□□□□ 0.75
USP28Q96RU2 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC19.71■□□□□ 0.75
USP28Q96RU2 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP28Q96RU2 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC19.71■□□□□ 0.75
USP28Q96RU2 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC19.71■□□□□ 0.74
USP28Q96RU2 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC19.7■□□□□ 0.74
USP28Q96RU2 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
USP28Q96RU2 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
USP28Q96RU2 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
USP28Q96RU2 PCDHB17P-201ENST00000539533 2393 ntBASIC19.7■□□□□ 0.74
USP28Q96RU2 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
USP28Q96RU2 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
USP28Q96RU2 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC19.7■□□□□ 0.74
USP28Q96RU2 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
USP28Q96RU2 FUOM-202ENST00000368551 628 ntTSL 3 BASIC19.7■□□□□ 0.74
USP28Q96RU2 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC19.7■□□□□ 0.74
USP28Q96RU2 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
USP28Q96RU2 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC19.7■□□□□ 0.74
USP28Q96RU2 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC19.7■□□□□ 0.74
USP28Q96RU2 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC19.7■□□□□ 0.74
USP28Q96RU2 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC19.7■□□□□ 0.74
USP28Q96RU2 NUS1P1-201ENST00000446295 882 ntBASIC19.7■□□□□ 0.74
USP28Q96RU2 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
USP28Q96RU2 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC19.7■□□□□ 0.74
USP28Q96RU2 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC19.7■□□□□ 0.74
USP28Q96RU2 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC19.7■□□□□ 0.74
USP28Q96RU2 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC19.7■□□□□ 0.74
USP28Q96RU2 AC114341.1-201ENST00000618070 349 ntBASIC19.7■□□□□ 0.74
USP28Q96RU2 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
USP28Q96RU2 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
USP28Q96RU2 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC19.7■□□□□ 0.74
USP28Q96RU2 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
USP28Q96RU2 AC018695.7-201ENST00000624587 2492 ntBASIC19.7■□□□□ 0.74
USP28Q96RU2 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
USP28Q96RU2 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
USP28Q96RU2 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
USP28Q96RU2 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC19.7■□□□□ 0.74
USP28Q96RU2 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC19.7■□□□□ 0.74
USP28Q96RU2 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
USP28Q96RU2 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC19.7■□□□□ 0.74
USP28Q96RU2 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
USP28Q96RU2 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC19.7■□□□□ 0.74
USP28Q96RU2 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
USP28Q96RU2 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
USP28Q96RU2 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP28Q96RU2 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP28Q96RU2 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP28Q96RU2 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP28Q96RU2 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP28Q96RU2 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
USP28Q96RU2 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC19.69■□□□□ 0.74
USP28Q96RU2 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP28Q96RU2 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC19.69■□□□□ 0.74
USP28Q96RU2 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP28Q96RU2 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC19.69■□□□□ 0.74
USP28Q96RU2 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP28Q96RU2 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC19.69■□□□□ 0.74
USP28Q96RU2 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC19.69■□□□□ 0.74
USP28Q96RU2 COPS8-203ENST00000409334 794 ntTSL 5 BASIC19.69■□□□□ 0.74
USP28Q96RU2 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC19.69■□□□□ 0.74
USP28Q96RU2 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC19.69■□□□□ 0.74
USP28Q96RU2 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC19.69■□□□□ 0.74
USP28Q96RU2 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC19.69■□□□□ 0.74
USP28Q96RU2 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP28Q96RU2 AP000550.4-202ENST00000639755 178 ntBASIC19.69■□□□□ 0.74
USP28Q96RU2 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
USP28Q96RU2 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC19.69■□□□□ 0.74
USP28Q96RU2 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP28Q96RU2 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
USP28Q96RU2 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC19.69■□□□□ 0.74
USP28Q96RU2 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
USP28Q96RU2 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP28Q96RU2 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms