Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHMP4CQ96CF2 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC20.57■□□□□ 0.88
CHMP4CQ96CF2 AC008894.3-201ENST00000624324 3103 ntBASIC20.57■□□□□ 0.88
CHMP4CQ96CF2 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHMP4CQ96CF2 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHMP4CQ96CF2 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC20.56■□□□□ 0.88
CHMP4CQ96CF2 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
CHMP4CQ96CF2 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP4CQ96CF2 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP4CQ96CF2 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP4CQ96CF2 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
CHMP4CQ96CF2 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP4CQ96CF2 PMPCAP1-201ENST00000508114 1576 ntBASIC20.56■□□□□ 0.88
CHMP4CQ96CF2 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP4CQ96CF2 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
CHMP4CQ96CF2 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP4CQ96CF2 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP4CQ96CF2 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP4CQ96CF2 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP4CQ96CF2 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP4CQ96CF2 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC20.56■□□□□ 0.88
CHMP4CQ96CF2 SCARNA2-201ENST00000458748 420 ntBASIC20.56■□□□□ 0.88
CHMP4CQ96CF2 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC20.56■□□□□ 0.88
CHMP4CQ96CF2 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC20.56■□□□□ 0.88
CHMP4CQ96CF2 PNMT-203ENST00000581428 677 ntTSL 2 BASIC20.56■□□□□ 0.88
CHMP4CQ96CF2 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP4CQ96CF2 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP4CQ96CF2 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP4CQ96CF2 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP4CQ96CF2 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
CHMP4CQ96CF2 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP4CQ96CF2 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC20.56■□□□□ 0.88
CHMP4CQ96CF2 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP4CQ96CF2 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC20.56■□□□□ 0.88
CHMP4CQ96CF2 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP4CQ96CF2 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP4CQ96CF2 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC20.56■□□□□ 0.88
CHMP4CQ96CF2 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC20.56■□□□□ 0.88
CHMP4CQ96CF2 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CHMP4CQ96CF2 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CHMP4CQ96CF2 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC20.55■□□□□ 0.88
CHMP4CQ96CF2 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CHMP4CQ96CF2 AL049757.1-201ENST00000616842 1596 ntBASIC20.55■□□□□ 0.88
CHMP4CQ96CF2 AC132938.5-201ENST00000624980 1813 ntBASIC20.55■□□□□ 0.88
CHMP4CQ96CF2 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CHMP4CQ96CF2 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC20.55■□□□□ 0.88
CHMP4CQ96CF2 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CHMP4CQ96CF2 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CHMP4CQ96CF2 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CHMP4CQ96CF2 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CHMP4CQ96CF2 CD9-202ENST00000382515 1229 ntTSL 5 BASIC20.55■□□□□ 0.88
CHMP4CQ96CF2 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
CHMP4CQ96CF2 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CHMP4CQ96CF2 AC092910.1-201ENST00000482027 1129 ntBASIC20.55■□□□□ 0.88
CHMP4CQ96CF2 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC20.55■□□□□ 0.88
CHMP4CQ96CF2 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC20.55■□□□□ 0.88
CHMP4CQ96CF2 AC116407.3-201ENST00000623905 1129 ntBASIC20.55■□□□□ 0.88
CHMP4CQ96CF2 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CHMP4CQ96CF2 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC20.55■□□□□ 0.88
CHMP4CQ96CF2 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CHMP4CQ96CF2 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC20.55■□□□□ 0.88
CHMP4CQ96CF2 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CHMP4CQ96CF2 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CHMP4CQ96CF2 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
CHMP4CQ96CF2 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
CHMP4CQ96CF2 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
CHMP4CQ96CF2 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
CHMP4CQ96CF2 EML3-212ENST00000494176 2901 ntTSL 2 BASIC20.54■□□□□ 0.88
CHMP4CQ96CF2 EML3-216ENST00000529309 2909 ntTSL 2 BASIC20.54■□□□□ 0.88
CHMP4CQ96CF2 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
CHMP4CQ96CF2 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHMP4CQ96CF2 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHMP4CQ96CF2 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHMP4CQ96CF2 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CHMP4CQ96CF2 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC20.54■□□□□ 0.88
CHMP4CQ96CF2 CSF3-203ENST00000394148 622 ntTSL 3 BASIC20.54■□□□□ 0.88
CHMP4CQ96CF2 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
CHMP4CQ96CF2 RAB17-203ENST00000409576 466 ntTSL 3 BASIC20.54■□□□□ 0.88
CHMP4CQ96CF2 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
CHMP4CQ96CF2 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
CHMP4CQ96CF2 PPIE-208ENST00000470213 927 ntTSL 3 BASIC20.54■□□□□ 0.88
CHMP4CQ96CF2 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC20.54■□□□□ 0.88
CHMP4CQ96CF2 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC20.54■□□□□ 0.88
CHMP4CQ96CF2 CYB561-217ENST00000582997 877 ntTSL 5 BASIC20.54■□□□□ 0.88
CHMP4CQ96CF2 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CHMP4CQ96CF2 AC064862.7-201ENST00000604520 867 ntBASIC20.54■□□□□ 0.88
CHMP4CQ96CF2 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC20.54■□□□□ 0.88
CHMP4CQ96CF2 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC20.54■□□□□ 0.88
CHMP4CQ96CF2 AD001527.2-201ENST00000622994 785 ntBASIC20.54■□□□□ 0.88
CHMP4CQ96CF2 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
CHMP4CQ96CF2 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC20.54■□□□□ 0.88
CHMP4CQ96CF2 AMT-250ENST00000637682 1823 ntTSL 5 BASIC20.54■□□□□ 0.88
CHMP4CQ96CF2 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHMP4CQ96CF2 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
CHMP4CQ96CF2 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHMP4CQ96CF2 AP002414.3-201ENST00000589352 1468 ntBASIC20.54■□□□□ 0.88
CHMP4CQ96CF2 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC20.54■□□□□ 0.88
CHMP4CQ96CF2 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHMP4CQ96CF2 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHMP4CQ96CF2 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms