Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC20.29■□□□□ 0.84
BRF1Q92994 S100A2-206ENST00000497140 697 ntTSL 2 BASIC20.29■□□□□ 0.84
BRF1Q92994 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC20.29■□□□□ 0.84
BRF1Q92994 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC20.29■□□□□ 0.84
BRF1Q92994 NKAPP1-205ENST00000585790 367 ntBASIC20.29■□□□□ 0.84
BRF1Q92994 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
BRF1Q92994 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
BRF1Q92994 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
BRF1Q92994 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
BRF1Q92994 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC20.29■□□□□ 0.84
BRF1Q92994 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC20.29■□□□□ 0.84
BRF1Q92994 AC005915.1-201ENST00000624912 2018 ntBASIC20.29■□□□□ 0.84
BRF1Q92994 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
BRF1Q92994 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
BRF1Q92994 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
BRF1Q92994 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
BRF1Q92994 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
BRF1Q92994 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
BRF1Q92994 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
BRF1Q92994 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC20.28■□□□□ 0.84
BRF1Q92994 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
BRF1Q92994 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
BRF1Q92994 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
BRF1Q92994 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
BRF1Q92994 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
BRF1Q92994 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
BRF1Q92994 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
BRF1Q92994 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
BRF1Q92994 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
BRF1Q92994 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
BRF1Q92994 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
BRF1Q92994 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
BRF1Q92994 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC20.28■□□□□ 0.84
BRF1Q92994 ACTG1P4-201ENST00000425123 1122 ntBASIC20.28■□□□□ 0.84
BRF1Q92994 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC20.28■□□□□ 0.84
BRF1Q92994 REXO1L6P-202ENST00000619970 1078 ntBASIC20.28■□□□□ 0.84
BRF1Q92994 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC20.28■□□□□ 0.84
BRF1Q92994 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
BRF1Q92994 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
BRF1Q92994 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
BRF1Q92994 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
BRF1Q92994 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
BRF1Q92994 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
BRF1Q92994 STX3-203ENST00000529177 1571 ntTSL 2 BASIC20.28■□□□□ 0.84
BRF1Q92994 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC20.28■□□□□ 0.84
BRF1Q92994 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
BRF1Q92994 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
BRF1Q92994 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
BRF1Q92994 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
BRF1Q92994 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
BRF1Q92994 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
BRF1Q92994 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
BRF1Q92994 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
BRF1Q92994 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
BRF1Q92994 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
BRF1Q92994 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
BRF1Q92994 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
BRF1Q92994 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
BRF1Q92994 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
BRF1Q92994 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
BRF1Q92994 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
BRF1Q92994 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
BRF1Q92994 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
BRF1Q92994 LINC00982-205ENST00000420957 435 ntBASIC20.27■□□□□ 0.84
BRF1Q92994 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
BRF1Q92994 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC20.27■□□□□ 0.84
BRF1Q92994 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC20.27■□□□□ 0.84
BRF1Q92994 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
BRF1Q92994 SDHD-206ENST00000528182 754 ntTSL 3 BASIC20.27■□□□□ 0.84
BRF1Q92994 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC20.27■□□□□ 0.84
BRF1Q92994 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
BRF1Q92994 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC20.27■□□□□ 0.84
BRF1Q92994 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC20.27■□□□□ 0.84
BRF1Q92994 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC20.27■□□□□ 0.84
BRF1Q92994 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
BRF1Q92994 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC20.27■□□□□ 0.84
BRF1Q92994 AL355877.3-201ENST00000622820 899 ntBASIC20.27■□□□□ 0.84
BRF1Q92994 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
BRF1Q92994 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
BRF1Q92994 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC20.27■□□□□ 0.84
BRF1Q92994 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
BRF1Q92994 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
BRF1Q92994 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC20.27■□□□□ 0.84
BRF1Q92994 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC20.27■□□□□ 0.84
BRF1Q92994 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
BRF1Q92994 AL356309.3-201ENST00000624132 1934 ntBASIC20.27■□□□□ 0.84
BRF1Q92994 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC20.27■□□□□ 0.84
BRF1Q92994 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC20.27■□□□□ 0.83
BRF1Q92994 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC20.27■□□□□ 0.83
BRF1Q92994 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
BRF1Q92994 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC20.26■□□□□ 0.83
BRF1Q92994 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
BRF1Q92994 GID4-202ENST00000376345 1391 ntTSL 3 BASIC20.26■□□□□ 0.83
BRF1Q92994 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC20.26■□□□□ 0.83
BRF1Q92994 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
BRF1Q92994 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
BRF1Q92994 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC20.26■□□□□ 0.83
BRF1Q92994 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
BRF1Q92994 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
BRF1Q92994 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms