Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC17.23■□□□□ 0.35
HMGB4Q8WW32 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGB4Q8WW32 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HMGB4Q8WW32 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
HMGB4Q8WW32 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC17.23■□□□□ 0.35
HMGB4Q8WW32 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGB4Q8WW32 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
HMGB4Q8WW32 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGB4Q8WW32 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
HMGB4Q8WW32 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HMGB4Q8WW32 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGB4Q8WW32 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGB4Q8WW32 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGB4Q8WW32 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC17.23■□□□□ 0.35
HMGB4Q8WW32 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC17.23■□□□□ 0.35
HMGB4Q8WW32 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
HMGB4Q8WW32 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC17.23■□□□□ 0.35
HMGB4Q8WW32 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGB4Q8WW32 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HMGB4Q8WW32 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC17.23■□□□□ 0.35
HMGB4Q8WW32 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC17.23■□□□□ 0.35
HMGB4Q8WW32 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC17.23■□□□□ 0.35
HMGB4Q8WW32 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGB4Q8WW32 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGB4Q8WW32 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGB4Q8WW32 LETM1P2-201ENST00000597330 2178 ntBASIC17.23■□□□□ 0.35
HMGB4Q8WW32 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGB4Q8WW32 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGB4Q8WW32 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HMGB4Q8WW32 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC17.23■□□□□ 0.35
HMGB4Q8WW32 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC17.23■□□□□ 0.35
HMGB4Q8WW32 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC17.23■□□□□ 0.35
HMGB4Q8WW32 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGB4Q8WW32 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGB4Q8WW32 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGB4Q8WW32 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGB4Q8WW32 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
HMGB4Q8WW32 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGB4Q8WW32 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC17.23■□□□□ 0.35
HMGB4Q8WW32 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGB4Q8WW32 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC17.22■□□□□ 0.35
HMGB4Q8WW32 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HMGB4Q8WW32 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGB4Q8WW32 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGB4Q8WW32 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
HMGB4Q8WW32 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGB4Q8WW32 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC17.22■□□□□ 0.35
HMGB4Q8WW32 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGB4Q8WW32 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC17.22■□□□□ 0.35
HMGB4Q8WW32 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
HMGB4Q8WW32 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGB4Q8WW32 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGB4Q8WW32 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGB4Q8WW32 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGB4Q8WW32 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGB4Q8WW32 HNRNPFP1-201ENST00000391730 1133 ntBASIC17.22■□□□□ 0.35
HMGB4Q8WW32 HLA-DRB6-201ENST00000411500 1235 ntBASIC17.22■□□□□ 0.35
HMGB4Q8WW32 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC17.22■□□□□ 0.35
HMGB4Q8WW32 ADH5P3-201ENST00000433842 1137 ntBASIC17.22■□□□□ 0.35
HMGB4Q8WW32 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC17.22■□□□□ 0.35
HMGB4Q8WW32 FAM86GP-201ENST00000448322 971 ntBASIC17.22■□□□□ 0.35
HMGB4Q8WW32 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC17.22■□□□□ 0.35
HMGB4Q8WW32 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC17.22■□□□□ 0.35
HMGB4Q8WW32 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
HMGB4Q8WW32 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC17.22■□□□□ 0.35
HMGB4Q8WW32 BSG-214ENST00000614867 960 ntTSL 3 BASIC17.22■□□□□ 0.35
HMGB4Q8WW32 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC17.22■□□□□ 0.35
HMGB4Q8WW32 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGB4Q8WW32 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGB4Q8WW32 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGB4Q8WW32 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HMGB4Q8WW32 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC17.22■□□□□ 0.35
HMGB4Q8WW32 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC17.22■□□□□ 0.35
HMGB4Q8WW32 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGB4Q8WW32 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGB4Q8WW32 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
HMGB4Q8WW32 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC17.21■□□□□ 0.35
HMGB4Q8WW32 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC17.21■□□□□ 0.35
HMGB4Q8WW32 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HMGB4Q8WW32 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
HMGB4Q8WW32 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HMGB4Q8WW32 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
HMGB4Q8WW32 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
HMGB4Q8WW32 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HMGB4Q8WW32 HLA-DQB1-201ENST00000374943 1656 ntBASIC17.21■□□□□ 0.35
HMGB4Q8WW32 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HMGB4Q8WW32 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HMGB4Q8WW32 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
HMGB4Q8WW32 AL355306.1-201ENST00000415580 579 ntBASIC17.21■□□□□ 0.35
HMGB4Q8WW32 AL671277.1-201ENST00000429656 993 ntBASIC17.21■□□□□ 0.35
HMGB4Q8WW32 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC17.21■□□□□ 0.35
HMGB4Q8WW32 AC005237.2-201ENST00000434368 219 ntBASIC17.21■□□□□ 0.35
HMGB4Q8WW32 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HMGB4Q8WW32 BCRP1-201ENST00000444246 691 ntBASIC17.21■□□□□ 0.35
HMGB4Q8WW32 SPDYE11-202ENST00000450699 704 ntBASIC17.21■□□□□ 0.35
HMGB4Q8WW32 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC17.21■□□□□ 0.35
HMGB4Q8WW32 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC17.21■□□□□ 0.35
HMGB4Q8WW32 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
HMGB4Q8WW32 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HMGB4Q8WW32 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms