Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HDDC3Q8N4P3 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC17.28■□□□□ 0.36
HDDC3Q8N4P3 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC17.28■□□□□ 0.36
HDDC3Q8N4P3 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC17.28■□□□□ 0.36
HDDC3Q8N4P3 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC17.28■□□□□ 0.36
HDDC3Q8N4P3 CYB561-216ENST00000582297 897 ntTSL 3 BASIC17.28■□□□□ 0.36
HDDC3Q8N4P3 AC239800.4-201ENST00000603712 296 ntBASIC17.28■□□□□ 0.36
HDDC3Q8N4P3 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HDDC3Q8N4P3 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
HDDC3Q8N4P3 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
HDDC3Q8N4P3 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC17.28■□□□□ 0.36
HDDC3Q8N4P3 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC17.28■□□□□ 0.36
HDDC3Q8N4P3 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
HDDC3Q8N4P3 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
HDDC3Q8N4P3 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HDDC3Q8N4P3 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HDDC3Q8N4P3 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HDDC3Q8N4P3 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
HDDC3Q8N4P3 AL355312.1-201ENST00000407115 2176 ntBASIC17.28■□□□□ 0.36
HDDC3Q8N4P3 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC17.28■□□□□ 0.36
HDDC3Q8N4P3 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HDDC3Q8N4P3 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HDDC3Q8N4P3 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC17.27■□□□□ 0.36
HDDC3Q8N4P3 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HDDC3Q8N4P3 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC17.27■□□□□ 0.36
HDDC3Q8N4P3 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
HDDC3Q8N4P3 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC17.27■□□□□ 0.36
HDDC3Q8N4P3 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC17.27■□□□□ 0.36
HDDC3Q8N4P3 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HDDC3Q8N4P3 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC17.27■□□□□ 0.36
HDDC3Q8N4P3 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HDDC3Q8N4P3 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HDDC3Q8N4P3 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HDDC3Q8N4P3 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
HDDC3Q8N4P3 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
HDDC3Q8N4P3 PC-214ENST00000628663 1470 ntTSL 5 BASIC17.27■□□□□ 0.36
HDDC3Q8N4P3 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
HDDC3Q8N4P3 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
HDDC3Q8N4P3 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC17.27■□□□□ 0.36
HDDC3Q8N4P3 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC17.27■□□□□ 0.36
HDDC3Q8N4P3 SMN2-210ENST00000511812 867 ntTSL 2 BASIC17.27■□□□□ 0.36
HDDC3Q8N4P3 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
HDDC3Q8N4P3 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC17.27■□□□□ 0.36
HDDC3Q8N4P3 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC17.27■□□□□ 0.36
HDDC3Q8N4P3 AC025580.3-201ENST00000617932 1424 ntBASIC17.27■□□□□ 0.35
HDDC3Q8N4P3 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC17.27■□□□□ 0.35
HDDC3Q8N4P3 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
HDDC3Q8N4P3 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC17.27■□□□□ 0.35
HDDC3Q8N4P3 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
HDDC3Q8N4P3 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
HDDC3Q8N4P3 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
HDDC3Q8N4P3 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
HDDC3Q8N4P3 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
HDDC3Q8N4P3 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC17.26■□□□□ 0.35
HDDC3Q8N4P3 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HDDC3Q8N4P3 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC17.26■□□□□ 0.35
HDDC3Q8N4P3 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
HDDC3Q8N4P3 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HDDC3Q8N4P3 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HDDC3Q8N4P3 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC17.26■□□□□ 0.35
HDDC3Q8N4P3 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HDDC3Q8N4P3 CALY-203ENST00000368558 825 ntTSL 5 BASIC17.26■□□□□ 0.35
HDDC3Q8N4P3 RHOQP3-201ENST00000437982 621 ntBASIC17.26■□□□□ 0.35
HDDC3Q8N4P3 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC17.26■□□□□ 0.35
HDDC3Q8N4P3 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC17.26■□□□□ 0.35
HDDC3Q8N4P3 CXCL1P1-201ENST00000502804 216 ntBASIC17.26■□□□□ 0.35
HDDC3Q8N4P3 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC17.26■□□□□ 0.35
HDDC3Q8N4P3 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC17.26■□□□□ 0.35
HDDC3Q8N4P3 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC17.26■□□□□ 0.35
HDDC3Q8N4P3 KRT19P2-202ENST00000557173 1012 ntBASIC17.26■□□□□ 0.35
HDDC3Q8N4P3 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC17.26■□□□□ 0.35
HDDC3Q8N4P3 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC17.26■□□□□ 0.35
HDDC3Q8N4P3 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC17.26■□□□□ 0.35
HDDC3Q8N4P3 AC007064.4-201ENST00000637740 555 ntBASIC17.26■□□□□ 0.35
HDDC3Q8N4P3 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HDDC3Q8N4P3 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HDDC3Q8N4P3 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HDDC3Q8N4P3 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
HDDC3Q8N4P3 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HDDC3Q8N4P3 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
HDDC3Q8N4P3 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HDDC3Q8N4P3 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC17.25■□□□□ 0.35
HDDC3Q8N4P3 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
HDDC3Q8N4P3 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HDDC3Q8N4P3 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HDDC3Q8N4P3 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HDDC3Q8N4P3 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HDDC3Q8N4P3 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HDDC3Q8N4P3 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HDDC3Q8N4P3 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HDDC3Q8N4P3 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
HDDC3Q8N4P3 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HDDC3Q8N4P3 AL035633.1-201ENST00000406139 838 ntBASIC17.25■□□□□ 0.35
HDDC3Q8N4P3 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC17.25■□□□□ 0.35
HDDC3Q8N4P3 TSEN15P1-201ENST00000423257 515 ntBASIC17.25■□□□□ 0.35
HDDC3Q8N4P3 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC17.25■□□□□ 0.35
HDDC3Q8N4P3 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC17.25■□□□□ 0.35
HDDC3Q8N4P3 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
HDDC3Q8N4P3 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HDDC3Q8N4P3 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms