Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HNF4AP41235 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC16.75■□□□□ 0.27
HNF4AP41235 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HNF4AP41235 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
HNF4AP41235 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HNF4AP41235 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HNF4AP41235 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HNF4AP41235 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HNF4AP41235 AC080080.1-201ENST00000625121 2420 ntBASIC16.75■□□□□ 0.27
HNF4AP41235 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HNF4AP41235 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HNF4AP41235 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC16.74■□□□□ 0.27
HNF4AP41235 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HNF4AP41235 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HNF4AP41235 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC16.74■□□□□ 0.27
HNF4AP41235 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC16.74■□□□□ 0.27
HNF4AP41235 PMPCAP1-201ENST00000508114 1576 ntBASIC16.74■□□□□ 0.27
HNF4AP41235 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HNF4AP41235 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HNF4AP41235 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HNF4AP41235 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC16.74■□□□□ 0.27
HNF4AP41235 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
HNF4AP41235 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HNF4AP41235 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HNF4AP41235 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
HNF4AP41235 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC16.74■□□□□ 0.27
HNF4AP41235 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC16.74■□□□□ 0.27
HNF4AP41235 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC16.74■□□□□ 0.27
HNF4AP41235 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC16.74■□□□□ 0.27
HNF4AP41235 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
HNF4AP41235 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC16.74■□□□□ 0.27
HNF4AP41235 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HNF4AP41235 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC16.74■□□□□ 0.27
HNF4AP41235 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HNF4AP41235 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HNF4AP41235 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
HNF4AP41235 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC16.74■□□□□ 0.27
HNF4AP41235 AC084018.2-201ENST00000613093 2607 ntBASIC16.74■□□□□ 0.27
HNF4AP41235 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HNF4AP41235 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HNF4AP41235 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
HNF4AP41235 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HNF4AP41235 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HNF4AP41235 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC16.74■□□□□ 0.27
HNF4AP41235 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC16.74■□□□□ 0.27
HNF4AP41235 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
HNF4AP41235 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC16.74■□□□□ 0.27
HNF4AP41235 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HNF4AP41235 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
HNF4AP41235 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HNF4AP41235 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
HNF4AP41235 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
HNF4AP41235 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
HNF4AP41235 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC16.73■□□□□ 0.27
HNF4AP41235 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
HNF4AP41235 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
HNF4AP41235 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
HNF4AP41235 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HNF4AP41235 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HNF4AP41235 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC16.73■□□□□ 0.27
HNF4AP41235 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC16.73■□□□□ 0.27
HNF4AP41235 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
HNF4AP41235 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
HNF4AP41235 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HNF4AP41235 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
HNF4AP41235 SDHD-206ENST00000528182 754 ntTSL 3 BASIC16.73■□□□□ 0.27
HNF4AP41235 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC16.73■□□□□ 0.27
HNF4AP41235 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HNF4AP41235 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC16.73■□□□□ 0.27
HNF4AP41235 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC16.73■□□□□ 0.27
HNF4AP41235 IGHV3OR16-7-201ENST00000604106 360 ntBASIC16.73■□□□□ 0.27
HNF4AP41235 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
HNF4AP41235 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC16.73■□□□□ 0.27
HNF4AP41235 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC16.73■□□□□ 0.27
HNF4AP41235 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HNF4AP41235 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HNF4AP41235 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
HNF4AP41235 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HNF4AP41235 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
HNF4AP41235 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
HNF4AP41235 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HNF4AP41235 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC16.73■□□□□ 0.27
HNF4AP41235 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC16.73■□□□□ 0.27
HNF4AP41235 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HNF4AP41235 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
HNF4AP41235 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HNF4AP41235 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
HNF4AP41235 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
HNF4AP41235 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HNF4AP41235 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
HNF4AP41235 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HNF4AP41235 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HNF4AP41235 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HNF4AP41235 AL135999.2-201ENST00000622438 1686 ntBASIC16.72■□□□□ 0.27
HNF4AP41235 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HNF4AP41235 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
HNF4AP41235 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC16.72■□□□□ 0.27
HNF4AP41235 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HNF4AP41235 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
HNF4AP41235 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms