Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PTPN4P29074 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PTPN4P29074 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PTPN4P29074 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
PTPN4P29074 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PTPN4P29074 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC17.36■□□□□ 0.37
PTPN4P29074 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
PTPN4P29074 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC17.36■□□□□ 0.37
PTPN4P29074 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PTPN4P29074 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
PTPN4P29074 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC17.36■□□□□ 0.37
PTPN4P29074 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC17.36■□□□□ 0.37
PTPN4P29074 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PTPN4P29074 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC17.36■□□□□ 0.37
PTPN4P29074 DUTP2-201ENST00000519164 463 ntBASIC17.36■□□□□ 0.37
PTPN4P29074 AP000867.3-201ENST00000524675 377 ntBASIC17.36■□□□□ 0.37
PTPN4P29074 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.36■□□□□ 0.37
PTPN4P29074 CIB2-208ENST00000560618 804 ntTSL 2 BASIC17.36■□□□□ 0.37
PTPN4P29074 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
PTPN4P29074 AC090616.6-201ENST00000582640 721 ntBASIC17.36■□□□□ 0.37
PTPN4P29074 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC17.36■□□□□ 0.37
PTPN4P29074 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC17.36■□□□□ 0.37
PTPN4P29074 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PTPN4P29074 AC103702.1-201ENST00000548801 2630 ntBASIC17.36■□□□□ 0.37
PTPN4P29074 AC100803.2-201ENST00000562459 1963 ntBASIC17.36■□□□□ 0.37
PTPN4P29074 UBC-206ENST00000538617 1303 ntTSL 5 BASIC17.36■□□□□ 0.37
PTPN4P29074 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PTPN4P29074 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
PTPN4P29074 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
PTPN4P29074 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PTPN4P29074 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PTPN4P29074 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
PTPN4P29074 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PTPN4P29074 CYP51A1P1-201ENST00000492267 1507 ntBASIC17.36■□□□□ 0.37
PTPN4P29074 AL163051.1-201ENST00000569214 1512 ntBASIC17.36■□□□□ 0.37
PTPN4P29074 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC17.36■□□□□ 0.37
PTPN4P29074 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
PTPN4P29074 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
PTPN4P29074 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
PTPN4P29074 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PTPN4P29074 WT1-209ENST00000530998 2421 ntTSL 2 BASIC17.36■□□□□ 0.37
PTPN4P29074 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC17.36■□□□□ 0.37
PTPN4P29074 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC17.36■□□□□ 0.37
PTPN4P29074 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
PTPN4P29074 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PTPN4P29074 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC17.35■□□□□ 0.37
PTPN4P29074 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PTPN4P29074 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC17.35■□□□□ 0.37
PTPN4P29074 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
PTPN4P29074 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC17.35■□□□□ 0.37
PTPN4P29074 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC17.35■□□□□ 0.37
PTPN4P29074 FUK-207ENST00000571514 3054 ntTSL 2 BASIC17.35■□□□□ 0.37
PTPN4P29074 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC17.35■□□□□ 0.37
PTPN4P29074 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC17.35■□□□□ 0.37
PTPN4P29074 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PTPN4P29074 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
PTPN4P29074 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PTPN4P29074 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
PTPN4P29074 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PTPN4P29074 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC17.35■□□□□ 0.37
PTPN4P29074 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC17.35■□□□□ 0.37
PTPN4P29074 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC17.35■□□□□ 0.37
PTPN4P29074 AC009065.1-201ENST00000564055 1225 ntBASIC17.35■□□□□ 0.37
PTPN4P29074 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PTPN4P29074 NAT14-202ENST00000587400 416 ntTSL 5 BASIC17.35■□□□□ 0.37
PTPN4P29074 AL390719.2-201ENST00000606993 987 ntBASIC17.35■□□□□ 0.37
PTPN4P29074 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC17.35■□□□□ 0.37
PTPN4P29074 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC17.35■□□□□ 0.37
PTPN4P29074 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PTPN4P29074 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PTPN4P29074 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PTPN4P29074 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PTPN4P29074 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PTPN4P29074 AL356309.3-201ENST00000624132 1934 ntBASIC17.35■□□□□ 0.37
PTPN4P29074 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PTPN4P29074 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
PTPN4P29074 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
PTPN4P29074 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PTPN4P29074 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PTPN4P29074 BANP-204ENST00000393208 2283 ntTSL 2 BASIC17.35■□□□□ 0.37
PTPN4P29074 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PTPN4P29074 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PTPN4P29074 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PTPN4P29074 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PTPN4P29074 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PTPN4P29074 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
PTPN4P29074 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
PTPN4P29074 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
PTPN4P29074 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
PTPN4P29074 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
PTPN4P29074 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PTPN4P29074 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PTPN4P29074 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PTPN4P29074 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PTPN4P29074 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
PTPN4P29074 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
PTPN4P29074 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PTPN4P29074 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
PTPN4P29074 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PTPN4P29074 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC17.34■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms