Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DMBP28068 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DMBP28068 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DMBP28068 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC13.18□□□□□ -0.3
HLA-DMBP28068 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DMBP28068 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DMBP28068 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DMBP28068 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DMBP28068 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC13.18□□□□□ -0.3
HLA-DMBP28068 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DMBP28068 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC13.18□□□□□ -0.3
HLA-DMBP28068 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
HLA-DMBP28068 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC13.18□□□□□ -0.3
HLA-DMBP28068 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DMBP28068 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC13.18□□□□□ -0.3
HLA-DMBP28068 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DMBP28068 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
HLA-DMBP28068 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC13.17□□□□□ -0.3
HLA-DMBP28068 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
HLA-DMBP28068 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC13.17□□□□□ -0.3
HLA-DMBP28068 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
HLA-DMBP28068 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
HLA-DMBP28068 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
HLA-DMBP28068 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
HLA-DMBP28068 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC13.17□□□□□ -0.3
HLA-DMBP28068 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC13.17□□□□□ -0.3
HLA-DMBP28068 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HLA-DMBP28068 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HLA-DMBP28068 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
HLA-DMBP28068 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HLA-DMBP28068 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HLA-DMBP28068 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HLA-DMBP28068 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HLA-DMBP28068 LINC02012-201ENST00000608206 1725 ntBASIC13.17□□□□□ -0.3
HLA-DMBP28068 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
HLA-DMBP28068 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
HLA-DMBP28068 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HLA-DMBP28068 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HLA-DMBP28068 BAALC-202ENST00000306391 243 ntTSL 5 BASIC13.17□□□□□ -0.3
HLA-DMBP28068 BAALC-204ENST00000330955 222 ntTSL 5 BASIC13.17□□□□□ -0.3
HLA-DMBP28068 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HLA-DMBP28068 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
HLA-DMBP28068 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HLA-DMBP28068 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC13.17□□□□□ -0.3
HLA-DMBP28068 TSPY22P-201ENST00000427496 604 ntBASIC13.17□□□□□ -0.3
HLA-DMBP28068 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC13.17□□□□□ -0.3
HLA-DMBP28068 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
HLA-DMBP28068 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC13.17□□□□□ -0.3
HLA-DMBP28068 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
HLA-DMBP28068 AL592071.1-201ENST00000611956 408 ntBASIC13.17□□□□□ -0.3
HLA-DMBP28068 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC13.17□□□□□ -0.3
HLA-DMBP28068 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC13.17□□□□□ -0.3
HLA-DMBP28068 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC13.17□□□□□ -0.3
HLA-DMBP28068 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HLA-DMBP28068 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
HLA-DMBP28068 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC13.17□□□□□ -0.3
HLA-DMBP28068 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC13.17□□□□□ -0.3
HLA-DMBP28068 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
HLA-DMBP28068 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
HLA-DMBP28068 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC13.17□□□□□ -0.3
HLA-DMBP28068 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
HLA-DMBP28068 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
HLA-DMBP28068 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC13.17□□□□□ -0.3
HLA-DMBP28068 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
HLA-DMBP28068 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
HLA-DMBP28068 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HLA-DMBP28068 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
HLA-DMBP28068 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC13.17□□□□□ -0.3
HLA-DMBP28068 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
HLA-DMBP28068 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC13.17□□□□□ -0.3
HLA-DMBP28068 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC13.17□□□□□ -0.3
HLA-DMBP28068 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HLA-DMBP28068 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
HLA-DMBP28068 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC13.16□□□□□ -0.3
HLA-DMBP28068 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
HLA-DMBP28068 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
HLA-DMBP28068 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC13.16□□□□□ -0.3
HLA-DMBP28068 AC097374.2-201ENST00000618617 1306 ntBASIC13.16□□□□□ -0.3
HLA-DMBP28068 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HLA-DMBP28068 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC13.16□□□□□ -0.3
HLA-DMBP28068 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HLA-DMBP28068 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HLA-DMBP28068 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
HLA-DMBP28068 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
HLA-DMBP28068 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HLA-DMBP28068 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
HLA-DMBP28068 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HLA-DMBP28068 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC13.16□□□□□ -0.3
HLA-DMBP28068 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
HLA-DMBP28068 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HLA-DMBP28068 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HLA-DMBP28068 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HLA-DMBP28068 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
HLA-DMBP28068 PKD1P5-201ENST00000532415 10291 ntBASIC13.16□□□□□ -0.3
HLA-DMBP28068 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
HLA-DMBP28068 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HLA-DMBP28068 RNF216P1-203ENST00000404404 2427 ntBASIC13.16□□□□□ -0.3
HLA-DMBP28068 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC13.16□□□□□ -0.3
HLA-DMBP28068 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HLA-DMBP28068 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms