Protein–RNA interactions for Protein: P0C091

FREM3, FRAS1-related extracellular matrix protein 3, humanhuman

Predictions only

Length 2,139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FREM3P0C091 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
FREM3P0C091 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC15.66■□□□□ 0.1
FREM3P0C091 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
FREM3P0C091 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
FREM3P0C091 AP001094.4-201ENST00000579008 2176 ntBASIC15.66■□□□□ 0.1
FREM3P0C091 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC15.66■□□□□ 0.1
FREM3P0C091 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
FREM3P0C091 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
FREM3P0C091 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC15.65■□□□□ 0.1
FREM3P0C091 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
FREM3P0C091 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
FREM3P0C091 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC15.65■□□□□ 0.1
FREM3P0C091 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC15.65■□□□□ 0.1
FREM3P0C091 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
FREM3P0C091 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC15.65■□□□□ 0.1
FREM3P0C091 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
FREM3P0C091 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
FREM3P0C091 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
FREM3P0C091 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
FREM3P0C091 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
FREM3P0C091 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
FREM3P0C091 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
FREM3P0C091 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
FREM3P0C091 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
FREM3P0C091 AC020916.1-201ENST00000587762 1774 ntBASIC15.65■□□□□ 0.1
FREM3P0C091 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
FREM3P0C091 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
FREM3P0C091 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
FREM3P0C091 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
FREM3P0C091 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC15.65■□□□□ 0.1
FREM3P0C091 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC15.65■□□□□ 0.1
FREM3P0C091 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC15.65■□□□□ 0.1
FREM3P0C091 AL139424.1-201ENST00000607572 797 ntBASIC15.65■□□□□ 0.1
FREM3P0C091 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
FREM3P0C091 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC15.65■□□□□ 0.1
FREM3P0C091 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC15.65■□□□□ 0.1
FREM3P0C091 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
FREM3P0C091 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
FREM3P0C091 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC15.65■□□□□ 0.1
FREM3P0C091 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC15.65■□□□□ 0.1
FREM3P0C091 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
FREM3P0C091 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
FREM3P0C091 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
FREM3P0C091 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
FREM3P0C091 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
FREM3P0C091 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC15.64■□□□□ 0.09
FREM3P0C091 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
FREM3P0C091 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
FREM3P0C091 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC15.64■□□□□ 0.09
FREM3P0C091 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC15.64■□□□□ 0.09
FREM3P0C091 STK25P1-201ENST00000585406 838 ntBASIC15.64■□□□□ 0.09
FREM3P0C091 AL805961.1-202ENST00000641562 540 ntBASIC15.64■□□□□ 0.09
FREM3P0C091 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
FREM3P0C091 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
FREM3P0C091 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
FREM3P0C091 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
FREM3P0C091 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
FREM3P0C091 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
FREM3P0C091 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC15.64■□□□□ 0.09
FREM3P0C091 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
FREM3P0C091 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
FREM3P0C091 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
FREM3P0C091 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC15.64■□□□□ 0.09
FREM3P0C091 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
FREM3P0C091 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
FREM3P0C091 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
FREM3P0C091 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC15.64■□□□□ 0.09
FREM3P0C091 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
FREM3P0C091 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
FREM3P0C091 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
FREM3P0C091 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
FREM3P0C091 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
FREM3P0C091 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
FREM3P0C091 AC009947.1-201ENST00000444350 727 ntBASIC15.64■□□□□ 0.09
FREM3P0C091 HS6ST1P1-201ENST00000481504 1234 ntBASIC15.64■□□□□ 0.09
FREM3P0C091 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC15.64■□□□□ 0.09
FREM3P0C091 PGM5P2-202ENST00000637225 1043 ntBASIC15.64■□□□□ 0.09
FREM3P0C091 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC15.64■□□□□ 0.09
FREM3P0C091 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
FREM3P0C091 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
FREM3P0C091 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC15.63■□□□□ 0.09
FREM3P0C091 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
FREM3P0C091 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
FREM3P0C091 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
FREM3P0C091 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
FREM3P0C091 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
FREM3P0C091 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
FREM3P0C091 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
FREM3P0C091 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
FREM3P0C091 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
FREM3P0C091 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
FREM3P0C091 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
FREM3P0C091 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC15.63■□□□□ 0.09
FREM3P0C091 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC15.63■□□□□ 0.09
FREM3P0C091 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
FREM3P0C091 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC15.63■□□□□ 0.09
FREM3P0C091 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC15.63■□□□□ 0.09
FREM3P0C091 AC046185.3-201ENST00000623228 1824 ntBASIC15.63■□□□□ 0.09
FREM3P0C091 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
FREM3P0C091 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms