Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC16.72■□□□□ 0.27
HOXC4P09017 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HOXC4P09017 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC16.72■□□□□ 0.27
HOXC4P09017 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HOXC4P09017 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
HOXC4P09017 AL021920.2-201ENST00000624828 1351 ntBASIC16.72■□□□□ 0.27
HOXC4P09017 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC16.72■□□□□ 0.27
HOXC4P09017 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC16.72■□□□□ 0.27
HOXC4P09017 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HOXC4P09017 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HOXC4P09017 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HOXC4P09017 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HOXC4P09017 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HOXC4P09017 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
HOXC4P09017 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC16.72■□□□□ 0.27
HOXC4P09017 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
HOXC4P09017 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC16.72■□□□□ 0.27
HOXC4P09017 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HOXC4P09017 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HOXC4P09017 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
HOXC4P09017 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HOXC4P09017 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
HOXC4P09017 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
HOXC4P09017 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
HOXC4P09017 LINC02012-201ENST00000608206 1725 ntBASIC16.71■□□□□ 0.27
HOXC4P09017 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HOXC4P09017 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
HOXC4P09017 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HOXC4P09017 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
HOXC4P09017 CD82-202ENST00000342935 967 ntTSL 5 BASIC16.71■□□□□ 0.27
HOXC4P09017 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC16.71■□□□□ 0.27
HOXC4P09017 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HOXC4P09017 DNAJB3-202ENST00000449667 1266 ntBASIC16.71■□□□□ 0.27
HOXC4P09017 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC16.71■□□□□ 0.27
HOXC4P09017 CFL1-202ENST00000524553 860 ntTSL 2 BASIC16.71■□□□□ 0.27
HOXC4P09017 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HOXC4P09017 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HOXC4P09017 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC16.71■□□□□ 0.27
HOXC4P09017 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HOXC4P09017 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
HOXC4P09017 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HOXC4P09017 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC16.71■□□□□ 0.27
HOXC4P09017 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
HOXC4P09017 AC012569.1-201ENST00000591191 1524 ntBASIC16.7■□□□□ 0.26
HOXC4P09017 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC16.7■□□□□ 0.26
HOXC4P09017 AL121761.2-201ENST00000598007 1648 ntBASIC16.7■□□□□ 0.26
HOXC4P09017 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HOXC4P09017 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
HOXC4P09017 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HOXC4P09017 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HOXC4P09017 HMGA1P7-201ENST00000406908 502 ntBASIC16.7■□□□□ 0.26
HOXC4P09017 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC16.7■□□□□ 0.26
HOXC4P09017 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HOXC4P09017 CCND1-203ENST00000536559 553 ntTSL 3 BASIC16.7■□□□□ 0.26
HOXC4P09017 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC16.7■□□□□ 0.26
HOXC4P09017 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
HOXC4P09017 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
HOXC4P09017 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
HOXC4P09017 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
HOXC4P09017 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HOXC4P09017 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
HOXC4P09017 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
HOXC4P09017 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HOXC4P09017 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC16.7■□□□□ 0.26
HOXC4P09017 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC16.7■□□□□ 0.26
HOXC4P09017 KRT8P49-201ENST00000604166 1432 ntBASIC16.7■□□□□ 0.26
HOXC4P09017 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HOXC4P09017 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
HOXC4P09017 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC16.69■□□□□ 0.26
HOXC4P09017 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HOXC4P09017 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
HOXC4P09017 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HOXC4P09017 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HOXC4P09017 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC16.69■□□□□ 0.26
HOXC4P09017 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC16.69■□□□□ 0.26
HOXC4P09017 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
HOXC4P09017 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC16.69■□□□□ 0.26
HOXC4P09017 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC16.69■□□□□ 0.26
HOXC4P09017 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HOXC4P09017 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HOXC4P09017 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
HOXC4P09017 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC16.69■□□□□ 0.26
HOXC4P09017 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC16.69■□□□□ 0.26
HOXC4P09017 PUS1-205ENST00000535067 838 ntTSL 3 BASIC16.69■□□□□ 0.26
HOXC4P09017 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC16.69■□□□□ 0.26
HOXC4P09017 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC16.69■□□□□ 0.26
HOXC4P09017 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
HOXC4P09017 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC16.69■□□□□ 0.26
HOXC4P09017 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC16.69■□□□□ 0.26
HOXC4P09017 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC16.69■□□□□ 0.26
HOXC4P09017 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HOXC4P09017 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HOXC4P09017 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
HOXC4P09017 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
HOXC4P09017 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HOXC4P09017 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
HOXC4P09017 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC16.69■□□□□ 0.26
HOXC4P09017 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
HOXC4P09017 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
HOXC4P09017 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms