Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
HLA-DOAP06340 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
HLA-DOAP06340 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
HLA-DOAP06340 KRT18P28-201ENST00000453838 1332 ntBASIC20.25■□□□□ 0.83
HLA-DOAP06340 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC20.25■□□□□ 0.83
HLA-DOAP06340 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
HLA-DOAP06340 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC20.25■□□□□ 0.83
HLA-DOAP06340 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
HLA-DOAP06340 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HLA-DOAP06340 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HLA-DOAP06340 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC20.24■□□□□ 0.83
HLA-DOAP06340 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HLA-DOAP06340 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HLA-DOAP06340 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HLA-DOAP06340 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HLA-DOAP06340 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
HLA-DOAP06340 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC20.24■□□□□ 0.83
HLA-DOAP06340 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
HLA-DOAP06340 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC20.24■□□□□ 0.83
HLA-DOAP06340 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC20.24■□□□□ 0.83
HLA-DOAP06340 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
HLA-DOAP06340 FALEC-201ENST00000416894 566 ntTSL 3 BASIC20.24■□□□□ 0.83
HLA-DOAP06340 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC20.24■□□□□ 0.83
HLA-DOAP06340 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC20.24■□□□□ 0.83
HLA-DOAP06340 NMU-203ENST00000507338 658 ntTSL 3 BASIC20.24■□□□□ 0.83
HLA-DOAP06340 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
HLA-DOAP06340 AC107918.2-201ENST00000530817 355 ntBASIC20.24■□□□□ 0.83
HLA-DOAP06340 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC20.24■□□□□ 0.83
HLA-DOAP06340 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
HLA-DOAP06340 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC20.24■□□□□ 0.83
HLA-DOAP06340 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC20.24■□□□□ 0.83
HLA-DOAP06340 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
HLA-DOAP06340 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HLA-DOAP06340 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC20.24■□□□□ 0.83
HLA-DOAP06340 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HLA-DOAP06340 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HLA-DOAP06340 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HLA-DOAP06340 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HLA-DOAP06340 NOC2LP1-202ENST00000452600 2235 ntBASIC20.23■□□□□ 0.83
HLA-DOAP06340 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HLA-DOAP06340 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC20.23■□□□□ 0.83
HLA-DOAP06340 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC20.23■□□□□ 0.83
HLA-DOAP06340 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HLA-DOAP06340 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HLA-DOAP06340 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC20.23■□□□□ 0.83
HLA-DOAP06340 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HLA-DOAP06340 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HLA-DOAP06340 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HLA-DOAP06340 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC20.23■□□□□ 0.83
HLA-DOAP06340 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC20.23■□□□□ 0.83
HLA-DOAP06340 METTL21AP1-201ENST00000438852 635 ntBASIC20.23■□□□□ 0.83
HLA-DOAP06340 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HLA-DOAP06340 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HLA-DOAP06340 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HLA-DOAP06340 AC112191.1-201ENST00000523689 701 ntBASIC20.23■□□□□ 0.83
HLA-DOAP06340 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC20.23■□□□□ 0.83
HLA-DOAP06340 AP002472.1-201ENST00000577490 586 ntBASIC20.23■□□□□ 0.83
HLA-DOAP06340 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC20.23■□□□□ 0.83
HLA-DOAP06340 AC092902.6-201ENST00000641783 218 ntBASIC20.23■□□□□ 0.83
HLA-DOAP06340 AL645728.2-201ENST00000641974 660 ntBASIC20.23■□□□□ 0.83
HLA-DOAP06340 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HLA-DOAP06340 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
HLA-DOAP06340 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC20.23■□□□□ 0.83
HLA-DOAP06340 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
HLA-DOAP06340 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HLA-DOAP06340 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HLA-DOAP06340 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HLA-DOAP06340 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HLA-DOAP06340 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
HLA-DOAP06340 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC20.22■□□□□ 0.83
HLA-DOAP06340 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC20.22■□□□□ 0.83
HLA-DOAP06340 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC20.22■□□□□ 0.83
HLA-DOAP06340 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC20.22■□□□□ 0.83
HLA-DOAP06340 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HLA-DOAP06340 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC20.22■□□□□ 0.83
HLA-DOAP06340 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HLA-DOAP06340 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HLA-DOAP06340 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
HLA-DOAP06340 RPL28-209ENST00000560055 670 ntTSL 3 BASIC20.22■□□□□ 0.83
HLA-DOAP06340 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC20.22■□□□□ 0.83
HLA-DOAP06340 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
HLA-DOAP06340 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC20.22■□□□□ 0.83
HLA-DOAP06340 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HLA-DOAP06340 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
HLA-DOAP06340 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
HLA-DOAP06340 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC20.22■□□□□ 0.83
HLA-DOAP06340 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HLA-DOAP06340 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
HLA-DOAP06340 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC20.22■□□□□ 0.83
HLA-DOAP06340 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HLA-DOAP06340 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
HLA-DOAP06340 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC20.22■□□□□ 0.83
HLA-DOAP06340 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC20.22■□□□□ 0.83
HLA-DOAP06340 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HLA-DOAP06340 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC20.21■□□□□ 0.83
HLA-DOAP06340 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HLA-DOAP06340 AC092919.2-201ENST00000623631 1645 ntBASIC20.21■□□□□ 0.83
HLA-DOAP06340 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC20.21■□□□□ 0.83
HLA-DOAP06340 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HLA-DOAP06340 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 87.7 ms