Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
LDB3O75112 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LDB3O75112 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
LDB3O75112 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LDB3O75112 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LDB3O75112 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
LDB3O75112 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LDB3O75112 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LDB3O75112 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
LDB3O75112 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
LDB3O75112 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
LDB3O75112 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC16.24■□□□□ 0.19
LDB3O75112 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LDB3O75112 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
LDB3O75112 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LDB3O75112 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC16.24■□□□□ 0.19
LDB3O75112 SLC25A1P3-201ENST00000395415 828 ntBASIC16.24■□□□□ 0.19
LDB3O75112 MRPL3P1-201ENST00000400109 1033 ntBASIC16.24■□□□□ 0.19
LDB3O75112 ACTG1P4-201ENST00000425123 1122 ntBASIC16.24■□□□□ 0.19
LDB3O75112 AC018712.1-201ENST00000455767 687 ntBASIC16.24■□□□□ 0.19
LDB3O75112 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
LDB3O75112 OR7E14P-202ENST00000530490 1290 ntBASIC16.24■□□□□ 0.19
LDB3O75112 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC16.24■□□□□ 0.19
LDB3O75112 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC16.24■□□□□ 0.19
LDB3O75112 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LDB3O75112 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC16.24■□□□□ 0.19
LDB3O75112 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC16.24■□□□□ 0.19
LDB3O75112 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC16.24■□□□□ 0.19
LDB3O75112 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
LDB3O75112 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LDB3O75112 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LDB3O75112 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
LDB3O75112 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC16.24■□□□□ 0.19
LDB3O75112 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
LDB3O75112 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
LDB3O75112 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LDB3O75112 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
LDB3O75112 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LDB3O75112 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
LDB3O75112 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
LDB3O75112 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LDB3O75112 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC16.23■□□□□ 0.19
LDB3O75112 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC16.23■□□□□ 0.19
LDB3O75112 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
LDB3O75112 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC16.23■□□□□ 0.19
LDB3O75112 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC16.23■□□□□ 0.19
LDB3O75112 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
LDB3O75112 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
LDB3O75112 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LDB3O75112 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
LDB3O75112 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
LDB3O75112 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
LDB3O75112 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
LDB3O75112 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC16.23■□□□□ 0.19
LDB3O75112 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC16.23■□□□□ 0.19
LDB3O75112 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC16.23■□□□□ 0.19
LDB3O75112 AC139887.3-201ENST00000568585 713 ntBASIC16.23■□□□□ 0.19
LDB3O75112 AL589182.2-201ENST00000619332 1049 ntBASIC16.23■□□□□ 0.19
LDB3O75112 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC16.23■□□□□ 0.19
LDB3O75112 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
LDB3O75112 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
LDB3O75112 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
LDB3O75112 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
LDB3O75112 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
LDB3O75112 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
LDB3O75112 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LDB3O75112 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
LDB3O75112 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LDB3O75112 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LDB3O75112 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC16.22■□□□□ 0.19
LDB3O75112 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LDB3O75112 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
LDB3O75112 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
LDB3O75112 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LDB3O75112 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC16.22■□□□□ 0.19
LDB3O75112 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
LDB3O75112 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
LDB3O75112 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
LDB3O75112 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LDB3O75112 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC16.22■□□□□ 0.19
LDB3O75112 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
LDB3O75112 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC16.22■□□□□ 0.19
LDB3O75112 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LDB3O75112 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC16.22■□□□□ 0.19
LDB3O75112 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC16.22■□□□□ 0.19
LDB3O75112 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC16.22■□□□□ 0.19
LDB3O75112 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
LDB3O75112 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC16.22■□□□□ 0.19
LDB3O75112 CYGB-205ENST00000590175 830 ntTSL 3 BASIC16.22■□□□□ 0.19
LDB3O75112 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC16.22■□□□□ 0.19
LDB3O75112 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
LDB3O75112 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC16.22■□□□□ 0.19
LDB3O75112 AC107918.4-202ENST00000641623 219 ntBASIC16.22■□□□□ 0.19
LDB3O75112 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
LDB3O75112 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC16.22■□□□□ 0.19
LDB3O75112 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LDB3O75112 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
LDB3O75112 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
LDB3O75112 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
LDB3O75112 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC16.22■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 67.9 ms