Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC18.85■□□□□ 0.61
CLDN3O15551 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC18.85■□□□□ 0.61
CLDN3O15551 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC18.85■□□□□ 0.61
CLDN3O15551 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC18.85■□□□□ 0.61
CLDN3O15551 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
CLDN3O15551 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
CLDN3O15551 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CLDN3O15551 AC117500.6-201ENST00000624871 588 ntBASIC18.85■□□□□ 0.61
CLDN3O15551 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
CLDN3O15551 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CLDN3O15551 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CLDN3O15551 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CLDN3O15551 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CLDN3O15551 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
CLDN3O15551 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CLDN3O15551 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC18.85■□□□□ 0.61
CLDN3O15551 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC18.85■□□□□ 0.61
CLDN3O15551 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CLDN3O15551 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC18.84■□□□□ 0.61
CLDN3O15551 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC18.84■□□□□ 0.61
CLDN3O15551 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CLDN3O15551 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC18.84■□□□□ 0.61
CLDN3O15551 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC18.84■□□□□ 0.61
CLDN3O15551 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CLDN3O15551 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CLDN3O15551 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC18.84■□□□□ 0.61
CLDN3O15551 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC18.84■□□□□ 0.61
CLDN3O15551 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
CLDN3O15551 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC18.84■□□□□ 0.61
CLDN3O15551 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC18.84■□□□□ 0.61
CLDN3O15551 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
CLDN3O15551 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CLDN3O15551 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
CLDN3O15551 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CLDN3O15551 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CLDN3O15551 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC18.83■□□□□ 0.61
CLDN3O15551 AC108860.2-201ENST00000562760 2183 ntBASIC18.83■□□□□ 0.61
CLDN3O15551 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
CLDN3O15551 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC18.83■□□□□ 0.61
CLDN3O15551 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
CLDN3O15551 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CLDN3O15551 CROCCP2-202ENST00000412962 2773 ntBASIC18.83■□□□□ 0.61
CLDN3O15551 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
CLDN3O15551 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC18.83■□□□□ 0.61
CLDN3O15551 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC18.83■□□□□ 0.61
CLDN3O15551 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC18.83■□□□□ 0.61
CLDN3O15551 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
CLDN3O15551 AL590787.1-201ENST00000568856 1315 ntBASIC18.83■□□□□ 0.61
CLDN3O15551 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC18.83■□□□□ 0.61
CLDN3O15551 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CLDN3O15551 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC18.83■□□□□ 0.6
CLDN3O15551 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC18.83■□□□□ 0.6
CLDN3O15551 AL022342.1-201ENST00000400363 863 ntBASIC18.83■□□□□ 0.6
CLDN3O15551 RPL13AP23-201ENST00000480739 586 ntBASIC18.83■□□□□ 0.6
CLDN3O15551 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CLDN3O15551 CD63-204ENST00000546939 779 ntTSL 3 BASIC18.83■□□□□ 0.6
CLDN3O15551 WDR88-203ENST00000592765 651 ntTSL 5 BASIC18.83■□□□□ 0.6
CLDN3O15551 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
CLDN3O15551 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CLDN3O15551 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
CLDN3O15551 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC18.83■□□□□ 0.6
CLDN3O15551 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC18.83■□□□□ 0.6
CLDN3O15551 AC141586.5-201ENST00000624546 2050 ntBASIC18.83■□□□□ 0.6
CLDN3O15551 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CLDN3O15551 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
CLDN3O15551 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC18.83■□□□□ 0.6
CLDN3O15551 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CLDN3O15551 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CLDN3O15551 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CLDN3O15551 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
CLDN3O15551 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLDN3O15551 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC18.82■□□□□ 0.6
CLDN3O15551 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLDN3O15551 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
CLDN3O15551 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLDN3O15551 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CLDN3O15551 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
CLDN3O15551 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLDN3O15551 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLDN3O15551 PTCHD3P3-201ENST00000403073 906 ntBASIC18.82■□□□□ 0.6
CLDN3O15551 NABP1-203ENST00000409510 843 ntTSL 5 BASIC18.82■□□□□ 0.6
CLDN3O15551 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC18.82■□□□□ 0.6
CLDN3O15551 RPS15P9-201ENST00000494093 319 ntBASIC18.82■□□□□ 0.6
CLDN3O15551 RNA5SP415-201ENST00000517246 115 ntBASIC18.82■□□□□ 0.6
CLDN3O15551 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC18.82■□□□□ 0.6
CLDN3O15551 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC18.82■□□□□ 0.6
CLDN3O15551 NME4-212ENST00000621774 904 ntTSL 3 BASIC18.82■□□□□ 0.6
CLDN3O15551 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CLDN3O15551 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
CLDN3O15551 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC18.82■□□□□ 0.6
CLDN3O15551 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLDN3O15551 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLDN3O15551 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLDN3O15551 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC18.82■□□□□ 0.6
CLDN3O15551 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
CLDN3O15551 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLDN3O15551 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC18.81■□□□□ 0.6
CLDN3O15551 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC18.81■□□□□ 0.6
CLDN3O15551 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLDN3O15551 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms