Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM49D1C9J1S8 STX3-203ENST00000529177 1571 ntTSL 2 BASIC17.32■□□□□ 0.36
TRIM49D1C9J1S8 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC17.32■□□□□ 0.36
TRIM49D1C9J1S8 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM49D1C9J1S8 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM49D1C9J1S8 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM49D1C9J1S8 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
TRIM49D1C9J1S8 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC17.31■□□□□ 0.36
TRIM49D1C9J1S8 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM49D1C9J1S8 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM49D1C9J1S8 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC17.31■□□□□ 0.36
TRIM49D1C9J1S8 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM49D1C9J1S8 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM49D1C9J1S8 AC008741.2-201ENST00000612792 3115 ntBASIC17.31■□□□□ 0.36
TRIM49D1C9J1S8 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC17.31■□□□□ 0.36
TRIM49D1C9J1S8 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
TRIM49D1C9J1S8 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC17.31■□□□□ 0.36
TRIM49D1C9J1S8 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC17.31■□□□□ 0.36
TRIM49D1C9J1S8 AC046158.3-201ENST00000624947 2558 ntBASIC17.31■□□□□ 0.36
TRIM49D1C9J1S8 ENSA-206ENST00000361631 725 ntTSL 2 BASIC17.31■□□□□ 0.36
TRIM49D1C9J1S8 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM49D1C9J1S8 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM49D1C9J1S8 AC113347.1-201ENST00000413321 391 ntBASIC17.31■□□□□ 0.36
TRIM49D1C9J1S8 AL137013.1-201ENST00000432946 1228 ntBASIC17.31■□□□□ 0.36
TRIM49D1C9J1S8 AC112907.2-201ENST00000448639 330 ntBASIC17.31■□□□□ 0.36
TRIM49D1C9J1S8 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM49D1C9J1S8 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM49D1C9J1S8 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
TRIM49D1C9J1S8 HYMAI.1-201ENST00000620949 238 ntBASIC17.31■□□□□ 0.36
TRIM49D1C9J1S8 WDR6-223ENST00000627177 207 ntTSL 2 BASIC17.31■□□□□ 0.36
TRIM49D1C9J1S8 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM49D1C9J1S8 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC17.31■□□□□ 0.36
TRIM49D1C9J1S8 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC17.31■□□□□ 0.36
TRIM49D1C9J1S8 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
TRIM49D1C9J1S8 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC17.31■□□□□ 0.36
TRIM49D1C9J1S8 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC17.31■□□□□ 0.36
TRIM49D1C9J1S8 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC17.31■□□□□ 0.36
TRIM49D1C9J1S8 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC17.31■□□□□ 0.36
TRIM49D1C9J1S8 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM49D1C9J1S8 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC17.31■□□□□ 0.36
TRIM49D1C9J1S8 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
TRIM49D1C9J1S8 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM49D1C9J1S8 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM49D1C9J1S8 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC17.3■□□□□ 0.36
TRIM49D1C9J1S8 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM49D1C9J1S8 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC17.3■□□□□ 0.36
TRIM49D1C9J1S8 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM49D1C9J1S8 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
TRIM49D1C9J1S8 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM49D1C9J1S8 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM49D1C9J1S8 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM49D1C9J1S8 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM49D1C9J1S8 TERF1P1-201ENST00000311003 1181 ntBASIC17.3■□□□□ 0.36
TRIM49D1C9J1S8 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM49D1C9J1S8 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM49D1C9J1S8 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC17.3■□□□□ 0.36
TRIM49D1C9J1S8 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC17.3■□□□□ 0.36
TRIM49D1C9J1S8 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
TRIM49D1C9J1S8 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC17.3■□□□□ 0.36
TRIM49D1C9J1S8 AL049757.1-201ENST00000616842 1596 ntBASIC17.3■□□□□ 0.36
TRIM49D1C9J1S8 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM49D1C9J1S8 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM49D1C9J1S8 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC17.3■□□□□ 0.36
TRIM49D1C9J1S8 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM49D1C9J1S8 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC17.3■□□□□ 0.36
TRIM49D1C9J1S8 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM49D1C9J1S8 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
TRIM49D1C9J1S8 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC17.3■□□□□ 0.36
TRIM49D1C9J1S8 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC17.29■□□□□ 0.36
TRIM49D1C9J1S8 CICP6-201ENST00000457191 2729 ntBASIC17.29■□□□□ 0.36
TRIM49D1C9J1S8 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC17.29■□□□□ 0.36
TRIM49D1C9J1S8 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
TRIM49D1C9J1S8 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM49D1C9J1S8 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC17.29■□□□□ 0.36
TRIM49D1C9J1S8 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC17.29■□□□□ 0.36
TRIM49D1C9J1S8 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM49D1C9J1S8 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC17.29■□□□□ 0.36
TRIM49D1C9J1S8 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC17.29■□□□□ 0.36
TRIM49D1C9J1S8 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC17.29■□□□□ 0.36
TRIM49D1C9J1S8 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM49D1C9J1S8 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
TRIM49D1C9J1S8 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
TRIM49D1C9J1S8 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM49D1C9J1S8 AC006449.5-201ENST00000610658 2098 ntBASIC17.29■□□□□ 0.36
TRIM49D1C9J1S8 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM49D1C9J1S8 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM49D1C9J1S8 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC17.29■□□□□ 0.36
TRIM49D1C9J1S8 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM49D1C9J1S8 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC17.29■□□□□ 0.36
TRIM49D1C9J1S8 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM49D1C9J1S8 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM49D1C9J1S8 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC17.29■□□□□ 0.36
TRIM49D1C9J1S8 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC17.29■□□□□ 0.36
TRIM49D1C9J1S8 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM49D1C9J1S8 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM49D1C9J1S8 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC17.29■□□□□ 0.36
TRIM49D1C9J1S8 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC17.29■□□□□ 0.36
TRIM49D1C9J1S8 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM49D1C9J1S8 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM49D1C9J1S8 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms