Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
COL6A5A8TX70 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC13.2□□□□□ -0.3
COL6A5A8TX70 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC13.2□□□□□ -0.3
COL6A5A8TX70 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL6A5A8TX70 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL6A5A8TX70 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC13.2□□□□□ -0.3
COL6A5A8TX70 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC13.2□□□□□ -0.3
COL6A5A8TX70 AC012569.1-201ENST00000591191 1524 ntBASIC13.19□□□□□ -0.3
COL6A5A8TX70 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC13.19□□□□□ -0.3
COL6A5A8TX70 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL6A5A8TX70 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
COL6A5A8TX70 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
COL6A5A8TX70 RNASE10-201ENST00000328444 717 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
COL6A5A8TX70 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL6A5A8TX70 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC13.19□□□□□ -0.3
COL6A5A8TX70 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL6A5A8TX70 RARRES2P9-201ENST00000565168 469 ntBASIC13.19□□□□□ -0.3
COL6A5A8TX70 AC005412.3-201ENST00000580309 715 ntBASIC13.19□□□□□ -0.3
COL6A5A8TX70 5S_rRNA.22-201ENST00000614916 106 ntBASIC13.19□□□□□ -0.3
COL6A5A8TX70 AL033527.5-201ENST00000641382 801 ntBASIC13.19□□□□□ -0.3
COL6A5A8TX70 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
COL6A5A8TX70 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC13.19□□□□□ -0.3
COL6A5A8TX70 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC13.19□□□□□ -0.3
COL6A5A8TX70 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC13.19□□□□□ -0.3
COL6A5A8TX70 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
COL6A5A8TX70 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
COL6A5A8TX70 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
COL6A5A8TX70 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
COL6A5A8TX70 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL6A5A8TX70 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL6A5A8TX70 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL6A5A8TX70 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC13.19□□□□□ -0.3
COL6A5A8TX70 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
COL6A5A8TX70 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
COL6A5A8TX70 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
COL6A5A8TX70 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
COL6A5A8TX70 MTRF1LP2-201ENST00000506027 1122 ntBASIC13.19□□□□□ -0.3
COL6A5A8TX70 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC13.19□□□□□ -0.3
COL6A5A8TX70 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC13.19□□□□□ -0.3
COL6A5A8TX70 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC13.19□□□□□ -0.3
COL6A5A8TX70 AC004790.1-201ENST00000612686 536 ntBASIC13.19□□□□□ -0.3
COL6A5A8TX70 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC13.19□□□□□ -0.3
COL6A5A8TX70 AC093010.1-201ENST00000473625 1624 ntBASIC13.19□□□□□ -0.3
COL6A5A8TX70 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC13.18□□□□□ -0.3
COL6A5A8TX70 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL6A5A8TX70 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL6A5A8TX70 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL6A5A8TX70 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
COL6A5A8TX70 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL6A5A8TX70 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC13.18□□□□□ -0.3
COL6A5A8TX70 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
COL6A5A8TX70 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
COL6A5A8TX70 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC13.18□□□□□ -0.3
COL6A5A8TX70 AC099336.1-201ENST00000417053 1171 ntBASIC13.18□□□□□ -0.3
COL6A5A8TX70 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC13.18□□□□□ -0.3
COL6A5A8TX70 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC13.18□□□□□ -0.3
COL6A5A8TX70 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC13.18□□□□□ -0.3
COL6A5A8TX70 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL6A5A8TX70 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC13.18□□□□□ -0.3
COL6A5A8TX70 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC13.18□□□□□ -0.3
COL6A5A8TX70 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC13.18□□□□□ -0.3
COL6A5A8TX70 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
COL6A5A8TX70 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
COL6A5A8TX70 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
COL6A5A8TX70 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL6A5A8TX70 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL6A5A8TX70 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC13.18□□□□□ -0.3
COL6A5A8TX70 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL6A5A8TX70 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL6A5A8TX70 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL6A5A8TX70 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
COL6A5A8TX70 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC13.18□□□□□ -0.3
COL6A5A8TX70 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL6A5A8TX70 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
COL6A5A8TX70 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL6A5A8TX70 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL6A5A8TX70 HINT2P1-201ENST00000419438 481 ntBASIC13.18□□□□□ -0.3
COL6A5A8TX70 AC142381.1-201ENST00000426099 345 ntBASIC13.18□□□□□ -0.3
COL6A5A8TX70 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC13.18□□□□□ -0.3
COL6A5A8TX70 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL6A5A8TX70 CETN4P-206ENST00000642099 2168 ntBASIC13.18□□□□□ -0.3
COL6A5A8TX70 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL6A5A8TX70 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL6A5A8TX70 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC13.17□□□□□ -0.3
COL6A5A8TX70 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL6A5A8TX70 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC13.17□□□□□ -0.3
COL6A5A8TX70 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
COL6A5A8TX70 ENSA-206ENST00000361631 725 ntTSL 2 BASIC13.17□□□□□ -0.3
COL6A5A8TX70 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
COL6A5A8TX70 KRT43P-201ENST00000434019 910 ntBASIC13.17□□□□□ -0.3
COL6A5A8TX70 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC13.17□□□□□ -0.3
COL6A5A8TX70 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL6A5A8TX70 TMEM198B-204ENST00000484016 896 ntBASIC13.17□□□□□ -0.3
COL6A5A8TX70 AC055876.2-201ENST00000531834 546 ntBASIC13.17□□□□□ -0.3
COL6A5A8TX70 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC13.17□□□□□ -0.3
COL6A5A8TX70 LITAF-210ENST00000571976 548 ntTSL 2 BASIC13.17□□□□□ -0.3
COL6A5A8TX70 LITAF-214ENST00000574703 486 ntTSL 2 BASIC13.17□□□□□ -0.3
COL6A5A8TX70 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC13.17□□□□□ -0.3
COL6A5A8TX70 AC010319.3-201ENST00000597028 470 ntBASIC13.17□□□□□ -0.3
COL6A5A8TX70 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC13.17□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms