Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC16.57■□□□□ 0.24
VPS29Q9UBQ0 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
VPS29Q9UBQ0 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VPS29Q9UBQ0 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC16.57■□□□□ 0.24
VPS29Q9UBQ0 BET1L-206ENST00000486280 665 ntTSL 3 BASIC16.57■□□□□ 0.24
VPS29Q9UBQ0 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
VPS29Q9UBQ0 AC124947.2-201ENST00000547118 1133 ntBASIC16.57■□□□□ 0.24
VPS29Q9UBQ0 COX5A-202ENST00000562233 441 ntTSL 3 BASIC16.57■□□□□ 0.24
VPS29Q9UBQ0 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC16.57■□□□□ 0.24
VPS29Q9UBQ0 AL445228.2-201ENST00000605589 952 ntBASIC16.57■□□□□ 0.24
VPS29Q9UBQ0 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC16.57■□□□□ 0.24
VPS29Q9UBQ0 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VPS29Q9UBQ0 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC16.57■□□□□ 0.24
VPS29Q9UBQ0 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
VPS29Q9UBQ0 AC099398.1-201ENST00000567919 2776 ntBASIC16.57■□□□□ 0.24
VPS29Q9UBQ0 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
VPS29Q9UBQ0 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VPS29Q9UBQ0 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
VPS29Q9UBQ0 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
VPS29Q9UBQ0 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
VPS29Q9UBQ0 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC16.57■□□□□ 0.24
VPS29Q9UBQ0 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VPS29Q9UBQ0 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC16.57■□□□□ 0.24
VPS29Q9UBQ0 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS29Q9UBQ0 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS29Q9UBQ0 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS29Q9UBQ0 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS29Q9UBQ0 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC16.56■□□□□ 0.24
VPS29Q9UBQ0 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC16.56■□□□□ 0.24
VPS29Q9UBQ0 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
VPS29Q9UBQ0 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
VPS29Q9UBQ0 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC16.56■□□□□ 0.24
VPS29Q9UBQ0 AC084018.2-201ENST00000613093 2607 ntBASIC16.56■□□□□ 0.24
VPS29Q9UBQ0 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC16.56■□□□□ 0.24
VPS29Q9UBQ0 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC16.56■□□□□ 0.24
VPS29Q9UBQ0 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS29Q9UBQ0 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS29Q9UBQ0 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS29Q9UBQ0 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
VPS29Q9UBQ0 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
VPS29Q9UBQ0 AC105020.1-201ENST00000435356 2205 ntBASIC16.56■□□□□ 0.24
VPS29Q9UBQ0 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC16.56■□□□□ 0.24
VPS29Q9UBQ0 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
VPS29Q9UBQ0 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC16.56■□□□□ 0.24
VPS29Q9UBQ0 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS29Q9UBQ0 THAP5-204ENST00000438865 868 ntTSL 2 BASIC16.56■□□□□ 0.24
VPS29Q9UBQ0 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC16.56■□□□□ 0.24
VPS29Q9UBQ0 AC092119.3-201ENST00000612618 583 ntBASIC16.56■□□□□ 0.24
VPS29Q9UBQ0 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC16.56■□□□□ 0.24
VPS29Q9UBQ0 AP000867.4-201ENST00000641616 219 ntBASIC16.56■□□□□ 0.24
VPS29Q9UBQ0 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC16.56■□□□□ 0.24
VPS29Q9UBQ0 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS29Q9UBQ0 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
VPS29Q9UBQ0 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
VPS29Q9UBQ0 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS29Q9UBQ0 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS29Q9UBQ0 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC16.56■□□□□ 0.24
VPS29Q9UBQ0 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS29Q9UBQ0 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
VPS29Q9UBQ0 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
VPS29Q9UBQ0 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS29Q9UBQ0 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS29Q9UBQ0 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC16.55■□□□□ 0.24
VPS29Q9UBQ0 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VPS29Q9UBQ0 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC16.55■□□□□ 0.24
VPS29Q9UBQ0 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
VPS29Q9UBQ0 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
VPS29Q9UBQ0 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS29Q9UBQ0 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS29Q9UBQ0 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC16.55■□□□□ 0.24
VPS29Q9UBQ0 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VPS29Q9UBQ0 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC16.55■□□□□ 0.24
VPS29Q9UBQ0 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC16.55■□□□□ 0.24
VPS29Q9UBQ0 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS29Q9UBQ0 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
VPS29Q9UBQ0 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC16.55■□□□□ 0.24
VPS29Q9UBQ0 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC16.55■□□□□ 0.24
VPS29Q9UBQ0 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC16.55■□□□□ 0.24
VPS29Q9UBQ0 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC16.55■□□□□ 0.24
VPS29Q9UBQ0 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC16.55■□□□□ 0.24
VPS29Q9UBQ0 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VPS29Q9UBQ0 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC16.55■□□□□ 0.24
VPS29Q9UBQ0 RNF146-204ENST00000476956 884 ntTSL 2 BASIC16.55■□□□□ 0.24
VPS29Q9UBQ0 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC16.55■□□□□ 0.24
VPS29Q9UBQ0 TPM1-226ENST00000560959 925 ntTSL 2 BASIC16.55■□□□□ 0.24
VPS29Q9UBQ0 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC16.55■□□□□ 0.24
VPS29Q9UBQ0 AC099336.1-202ENST00000602961 463 ntBASIC16.55■□□□□ 0.24
VPS29Q9UBQ0 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VPS29Q9UBQ0 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC16.55■□□□□ 0.24
VPS29Q9UBQ0 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC16.55■□□□□ 0.24
VPS29Q9UBQ0 CCNC-219ENST00000627680 896 ntTSL 5 BASIC16.55■□□□□ 0.24
VPS29Q9UBQ0 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VPS29Q9UBQ0 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VPS29Q9UBQ0 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC16.55■□□□□ 0.24
VPS29Q9UBQ0 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS29Q9UBQ0 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC16.55■□□□□ 0.24
VPS29Q9UBQ0 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC16.55■□□□□ 0.24
VPS29Q9UBQ0 AC005915.1-201ENST00000624912 2018 ntBASIC16.55■□□□□ 0.24
VPS29Q9UBQ0 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VPS29Q9UBQ0 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms