Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM4Q9C037 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM4Q9C037 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC17.34■□□□□ 0.37
TRIM4Q9C037 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC17.34■□□□□ 0.37
TRIM4Q9C037 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC17.34■□□□□ 0.37
TRIM4Q9C037 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRIM4Q9C037 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC17.33■□□□□ 0.37
TRIM4Q9C037 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
TRIM4Q9C037 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.37
TRIM4Q9C037 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRIM4Q9C037 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC17.33■□□□□ 0.37
TRIM4Q9C037 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRIM4Q9C037 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRIM4Q9C037 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC17.33■□□□□ 0.37
TRIM4Q9C037 SDHAP2-201ENST00000455183 2001 ntBASIC17.33■□□□□ 0.37
TRIM4Q9C037 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC17.33■□□□□ 0.37
TRIM4Q9C037 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRIM4Q9C037 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC17.33■□□□□ 0.37
TRIM4Q9C037 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
TRIM4Q9C037 UROS-202ENST00000368778 1556 ntTSL 2 BASIC17.33■□□□□ 0.37
TRIM4Q9C037 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
TRIM4Q9C037 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC17.33■□□□□ 0.36
TRIM4Q9C037 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM4Q9C037 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM4Q9C037 TSPY12P-201ENST00000421279 868 ntBASIC17.33■□□□□ 0.36
TRIM4Q9C037 LINC00265-3P-201ENST00000447588 903 ntBASIC17.33■□□□□ 0.36
TRIM4Q9C037 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC17.33■□□□□ 0.36
TRIM4Q9C037 PENK-208ENST00000523051 772 ntTSL 5 BASIC17.33■□□□□ 0.36
TRIM4Q9C037 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC17.33■□□□□ 0.36
TRIM4Q9C037 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC17.33■□□□□ 0.36
TRIM4Q9C037 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC17.33■□□□□ 0.36
TRIM4Q9C037 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC17.33■□□□□ 0.36
TRIM4Q9C037 LINC02084-201ENST00000606069 1096 ntBASIC17.33■□□□□ 0.36
TRIM4Q9C037 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC17.33■□□□□ 0.36
TRIM4Q9C037 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC17.33■□□□□ 0.36
TRIM4Q9C037 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC17.33■□□□□ 0.36
TRIM4Q9C037 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM4Q9C037 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC17.33■□□□□ 0.36
TRIM4Q9C037 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM4Q9C037 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM4Q9C037 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM4Q9C037 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM4Q9C037 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM4Q9C037 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC17.33■□□□□ 0.36
TRIM4Q9C037 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
TRIM4Q9C037 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM4Q9C037 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM4Q9C037 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC17.33■□□□□ 0.36
TRIM4Q9C037 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC17.33■□□□□ 0.36
TRIM4Q9C037 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM4Q9C037 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM4Q9C037 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM4Q9C037 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM4Q9C037 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
TRIM4Q9C037 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM4Q9C037 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM4Q9C037 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
TRIM4Q9C037 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC17.32■□□□□ 0.36
TRIM4Q9C037 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC17.32■□□□□ 0.36
TRIM4Q9C037 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM4Q9C037 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
TRIM4Q9C037 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM4Q9C037 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM4Q9C037 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC17.32■□□□□ 0.36
TRIM4Q9C037 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
TRIM4Q9C037 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC17.32■□□□□ 0.36
TRIM4Q9C037 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM4Q9C037 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM4Q9C037 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM4Q9C037 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM4Q9C037 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
TRIM4Q9C037 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM4Q9C037 FAM220CP-201ENST00000395253 831 ntBASIC17.32■□□□□ 0.36
TRIM4Q9C037 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC17.32■□□□□ 0.36
TRIM4Q9C037 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC17.32■□□□□ 0.36
TRIM4Q9C037 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC17.32■□□□□ 0.36
TRIM4Q9C037 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC17.32■□□□□ 0.36
TRIM4Q9C037 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC17.32■□□□□ 0.36
TRIM4Q9C037 CALM3-211ENST00000598871 561 ntTSL 4 BASIC17.32■□□□□ 0.36
TRIM4Q9C037 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC17.32■□□□□ 0.36
TRIM4Q9C037 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM4Q9C037 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM4Q9C037 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM4Q9C037 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM4Q9C037 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
TRIM4Q9C037 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM4Q9C037 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC17.32■□□□□ 0.36
TRIM4Q9C037 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC17.32■□□□□ 0.36
TRIM4Q9C037 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC17.32■□□□□ 0.36
TRIM4Q9C037 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM4Q9C037 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM4Q9C037 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC17.32■□□□□ 0.36
TRIM4Q9C037 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM4Q9C037 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM4Q9C037 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM4Q9C037 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC17.31■□□□□ 0.36
TRIM4Q9C037 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM4Q9C037 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM4Q9C037 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
TRIM4Q9C037 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms