Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC18.31■□□□□ 0.52
PAAF1Q9BRP4 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC18.31■□□□□ 0.52
PAAF1Q9BRP4 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
PAAF1Q9BRP4 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PAAF1Q9BRP4 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PAAF1Q9BRP4 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PAAF1Q9BRP4 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
PAAF1Q9BRP4 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PAAF1Q9BRP4 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PAAF1Q9BRP4 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC18.31■□□□□ 0.52
PAAF1Q9BRP4 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC18.31■□□□□ 0.52
PAAF1Q9BRP4 FALEC-201ENST00000416894 566 ntTSL 3 BASIC18.31■□□□□ 0.52
PAAF1Q9BRP4 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC18.31■□□□□ 0.52
PAAF1Q9BRP4 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC18.31■□□□□ 0.52
PAAF1Q9BRP4 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
PAAF1Q9BRP4 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC18.31■□□□□ 0.52
PAAF1Q9BRP4 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC18.31■□□□□ 0.52
PAAF1Q9BRP4 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC18.31■□□□□ 0.52
PAAF1Q9BRP4 CITED2-204ENST00000618718 901 ntTSL 2 BASIC18.31■□□□□ 0.52
PAAF1Q9BRP4 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PAAF1Q9BRP4 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC18.31■□□□□ 0.52
PAAF1Q9BRP4 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC18.31■□□□□ 0.52
PAAF1Q9BRP4 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PAAF1Q9BRP4 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PAAF1Q9BRP4 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
PAAF1Q9BRP4 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PAAF1Q9BRP4 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
PAAF1Q9BRP4 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC18.3■□□□□ 0.52
PAAF1Q9BRP4 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PAAF1Q9BRP4 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PAAF1Q9BRP4 BOC-212ENST00000485230 2173 ntTSL 2 BASIC18.3■□□□□ 0.52
PAAF1Q9BRP4 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PAAF1Q9BRP4 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PAAF1Q9BRP4 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PAAF1Q9BRP4 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC18.3■□□□□ 0.52
PAAF1Q9BRP4 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC18.3■□□□□ 0.52
PAAF1Q9BRP4 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
PAAF1Q9BRP4 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
PAAF1Q9BRP4 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC18.3■□□□□ 0.52
PAAF1Q9BRP4 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC18.3■□□□□ 0.52
PAAF1Q9BRP4 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
PAAF1Q9BRP4 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC18.3■□□□□ 0.52
PAAF1Q9BRP4 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
PAAF1Q9BRP4 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PAAF1Q9BRP4 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
PAAF1Q9BRP4 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PAAF1Q9BRP4 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
PAAF1Q9BRP4 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC18.3■□□□□ 0.52
PAAF1Q9BRP4 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC18.3■□□□□ 0.52
PAAF1Q9BRP4 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
PAAF1Q9BRP4 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC18.3■□□□□ 0.52
PAAF1Q9BRP4 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PAAF1Q9BRP4 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC18.3■□□□□ 0.52
PAAF1Q9BRP4 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
PAAF1Q9BRP4 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC18.3■□□□□ 0.52
PAAF1Q9BRP4 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
PAAF1Q9BRP4 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC18.29■□□□□ 0.52
PAAF1Q9BRP4 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC18.29■□□□□ 0.52
PAAF1Q9BRP4 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
PAAF1Q9BRP4 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PAAF1Q9BRP4 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PAAF1Q9BRP4 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PAAF1Q9BRP4 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
PAAF1Q9BRP4 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC18.29■□□□□ 0.52
PAAF1Q9BRP4 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PAAF1Q9BRP4 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PAAF1Q9BRP4 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PAAF1Q9BRP4 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
PAAF1Q9BRP4 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC18.29■□□□□ 0.52
PAAF1Q9BRP4 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
PAAF1Q9BRP4 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PAAF1Q9BRP4 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PAAF1Q9BRP4 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
PAAF1Q9BRP4 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PAAF1Q9BRP4 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PAAF1Q9BRP4 MMP17-203ENST00000535004 719 ntTSL 3 BASIC18.29■□□□□ 0.52
PAAF1Q9BRP4 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
PAAF1Q9BRP4 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC18.29■□□□□ 0.52
PAAF1Q9BRP4 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
PAAF1Q9BRP4 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
PAAF1Q9BRP4 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PAAF1Q9BRP4 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PAAF1Q9BRP4 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC18.29■□□□□ 0.52
PAAF1Q9BRP4 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
PAAF1Q9BRP4 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.29■□□□□ 0.52
PAAF1Q9BRP4 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
PAAF1Q9BRP4 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
PAAF1Q9BRP4 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
PAAF1Q9BRP4 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
PAAF1Q9BRP4 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
PAAF1Q9BRP4 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
PAAF1Q9BRP4 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
PAAF1Q9BRP4 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
PAAF1Q9BRP4 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PAAF1Q9BRP4 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PAAF1Q9BRP4 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
PAAF1Q9BRP4 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
PAAF1Q9BRP4 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC18.28■□□□□ 0.52
PAAF1Q9BRP4 STOM-202ENST00000347359 870 ntTSL 2 BASIC18.28■□□□□ 0.52
PAAF1Q9BRP4 NEK7-201ENST00000367383 586 ntTSL 2 BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms