Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC14.91□□□□□ -0.02
COL12A1Q99715 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL12A1Q99715 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC14.91□□□□□ -0.02
COL12A1Q99715 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL12A1Q99715 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
COL12A1Q99715 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC14.91□□□□□ -0.02
COL12A1Q99715 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
COL12A1Q99715 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC14.91□□□□□ -0.02
COL12A1Q99715 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL12A1Q99715 AC109462.3-201ENST00000573934 613 ntBASIC14.91□□□□□ -0.02
COL12A1Q99715 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC14.91□□□□□ -0.02
COL12A1Q99715 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC14.91□□□□□ -0.02
COL12A1Q99715 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC14.9□□□□□ -0.02
COL12A1Q99715 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC14.9□□□□□ -0.02
COL12A1Q99715 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL12A1Q99715 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL12A1Q99715 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL12A1Q99715 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL12A1Q99715 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC14.9□□□□□ -0.02
COL12A1Q99715 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL12A1Q99715 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL12A1Q99715 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
COL12A1Q99715 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC14.9□□□□□ -0.02
COL12A1Q99715 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC14.9□□□□□ -0.02
COL12A1Q99715 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
COL12A1Q99715 AP005482.1-201ENST00000563722 1273 ntBASIC14.9□□□□□ -0.02
COL12A1Q99715 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC14.9□□□□□ -0.02
COL12A1Q99715 BTBD7P1-201ENST00000447253 1453 ntBASIC14.9□□□□□ -0.02
COL12A1Q99715 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL12A1Q99715 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL12A1Q99715 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC14.9□□□□□ -0.02
COL12A1Q99715 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL12A1Q99715 HNRNPA3P1-201ENST00000401429 1139 ntBASIC14.9□□□□□ -0.02
COL12A1Q99715 HNRNPA3P5-201ENST00000455201 833 ntBASIC14.9□□□□□ -0.02
COL12A1Q99715 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC14.9□□□□□ -0.02
COL12A1Q99715 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC14.9□□□□□ -0.02
COL12A1Q99715 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL12A1Q99715 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL12A1Q99715 AC109635.5-201ENST00000533593 962 ntBASIC14.9□□□□□ -0.02
COL12A1Q99715 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC14.9□□□□□ -0.02
COL12A1Q99715 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC14.9□□□□□ -0.02
COL12A1Q99715 AC004790.1-201ENST00000612686 536 ntBASIC14.9□□□□□ -0.02
COL12A1Q99715 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
COL12A1Q99715 AC104581.1-202ENST00000635932 2618 ntBASIC14.9□□□□□ -0.02
COL12A1Q99715 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL12A1Q99715 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL12A1Q99715 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL12A1Q99715 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
COL12A1Q99715 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
COL12A1Q99715 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC14.89□□□□□ -0.03
COL12A1Q99715 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL12A1Q99715 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL12A1Q99715 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL12A1Q99715 SLC25A6P2-201ENST00000497974 877 ntBASIC14.89□□□□□ -0.03
COL12A1Q99715 AC135586.1-201ENST00000539323 574 ntBASIC14.89□□□□□ -0.03
COL12A1Q99715 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL12A1Q99715 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC14.89□□□□□ -0.03
COL12A1Q99715 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC14.89□□□□□ -0.03
COL12A1Q99715 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
COL12A1Q99715 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL12A1Q99715 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL12A1Q99715 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL12A1Q99715 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
COL12A1Q99715 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
COL12A1Q99715 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
COL12A1Q99715 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL12A1Q99715 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC14.89□□□□□ -0.03
COL12A1Q99715 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
COL12A1Q99715 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
COL12A1Q99715 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC14.89□□□□□ -0.03
COL12A1Q99715 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC14.89□□□□□ -0.03
COL12A1Q99715 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC14.89□□□□□ -0.03
COL12A1Q99715 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
COL12A1Q99715 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC14.89□□□□□ -0.03
COL12A1Q99715 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC14.89□□□□□ -0.03
COL12A1Q99715 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
COL12A1Q99715 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC14.89□□□□□ -0.03
COL12A1Q99715 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL12A1Q99715 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL12A1Q99715 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
COL12A1Q99715 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL12A1Q99715 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC14.89□□□□□ -0.03
COL12A1Q99715 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC14.89□□□□□ -0.03
COL12A1Q99715 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC14.89□□□□□ -0.03
COL12A1Q99715 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC14.89□□□□□ -0.03
COL12A1Q99715 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC14.89□□□□□ -0.03
COL12A1Q99715 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL12A1Q99715 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC14.89□□□□□ -0.03
COL12A1Q99715 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC14.89□□□□□ -0.03
COL12A1Q99715 AC026740.1-201ENST00000607068 791 ntBASIC14.89□□□□□ -0.03
COL12A1Q99715 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
COL12A1Q99715 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL12A1Q99715 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
COL12A1Q99715 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL12A1Q99715 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
COL12A1Q99715 LINC00896-202ENST00000609602 2128 ntBASIC14.88□□□□□ -0.03
COL12A1Q99715 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL12A1Q99715 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL12A1Q99715 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
COL12A1Q99715 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms