Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
LMX1AQ8TE12 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
LMX1AQ8TE12 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
LMX1AQ8TE12 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
LMX1AQ8TE12 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
LMX1AQ8TE12 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
LMX1AQ8TE12 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
LMX1AQ8TE12 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
LMX1AQ8TE12 PON3-203ENST00000427422 894 ntTSL 3 BASIC16.77■□□□□ 0.28
LMX1AQ8TE12 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC16.77■□□□□ 0.28
LMX1AQ8TE12 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
LMX1AQ8TE12 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC16.77■□□□□ 0.28
LMX1AQ8TE12 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC16.77■□□□□ 0.28
LMX1AQ8TE12 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
LMX1AQ8TE12 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC16.77■□□□□ 0.28
LMX1AQ8TE12 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC16.77■□□□□ 0.28
LMX1AQ8TE12 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC16.77■□□□□ 0.28
LMX1AQ8TE12 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
LMX1AQ8TE12 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
LMX1AQ8TE12 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
LMX1AQ8TE12 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
LMX1AQ8TE12 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.27
LMX1AQ8TE12 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
LMX1AQ8TE12 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
LMX1AQ8TE12 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
LMX1AQ8TE12 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
LMX1AQ8TE12 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LMX1AQ8TE12 CD276-201ENST00000318424 2738 ntTSL 5 BASIC16.76■□□□□ 0.27
LMX1AQ8TE12 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LMX1AQ8TE12 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC16.76■□□□□ 0.27
LMX1AQ8TE12 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
LMX1AQ8TE12 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC16.76■□□□□ 0.27
LMX1AQ8TE12 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LMX1AQ8TE12 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC16.76■□□□□ 0.27
LMX1AQ8TE12 AC129492.6-201ENST00000611383 1305 ntBASIC16.76■□□□□ 0.27
LMX1AQ8TE12 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
LMX1AQ8TE12 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
LMX1AQ8TE12 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC16.76■□□□□ 0.27
LMX1AQ8TE12 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
LMX1AQ8TE12 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LMX1AQ8TE12 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC16.76■□□□□ 0.27
LMX1AQ8TE12 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
LMX1AQ8TE12 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC16.76■□□□□ 0.27
LMX1AQ8TE12 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC16.76■□□□□ 0.27
LMX1AQ8TE12 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LMX1AQ8TE12 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
LMX1AQ8TE12 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC16.76■□□□□ 0.27
LMX1AQ8TE12 AP002472.1-201ENST00000577490 586 ntBASIC16.76■□□□□ 0.27
LMX1AQ8TE12 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC16.76■□□□□ 0.27
LMX1AQ8TE12 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
LMX1AQ8TE12 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
LMX1AQ8TE12 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC16.76■□□□□ 0.27
LMX1AQ8TE12 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC16.76■□□□□ 0.27
LMX1AQ8TE12 CITED2-204ENST00000618718 901 ntTSL 2 BASIC16.76■□□□□ 0.27
LMX1AQ8TE12 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC16.76■□□□□ 0.27
LMX1AQ8TE12 AC092902.6-201ENST00000641783 218 ntBASIC16.76■□□□□ 0.27
LMX1AQ8TE12 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LMX1AQ8TE12 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
LMX1AQ8TE12 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LMX1AQ8TE12 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC16.76■□□□□ 0.27
LMX1AQ8TE12 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
LMX1AQ8TE12 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC16.76■□□□□ 0.27
LMX1AQ8TE12 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LMX1AQ8TE12 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
LMX1AQ8TE12 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC16.76■□□□□ 0.27
LMX1AQ8TE12 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
LMX1AQ8TE12 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC16.75■□□□□ 0.27
LMX1AQ8TE12 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
LMX1AQ8TE12 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
LMX1AQ8TE12 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
LMX1AQ8TE12 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LMX1AQ8TE12 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC16.75■□□□□ 0.27
LMX1AQ8TE12 CYP51A1P2-201ENST00000419457 1499 ntBASIC16.75■□□□□ 0.27
LMX1AQ8TE12 AC092919.2-201ENST00000623631 1645 ntBASIC16.75■□□□□ 0.27
LMX1AQ8TE12 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LMX1AQ8TE12 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
LMX1AQ8TE12 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LMX1AQ8TE12 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
LMX1AQ8TE12 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC16.75■□□□□ 0.27
LMX1AQ8TE12 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC16.75■□□□□ 0.27
LMX1AQ8TE12 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC16.75■□□□□ 0.27
LMX1AQ8TE12 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC16.75■□□□□ 0.27
LMX1AQ8TE12 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
LMX1AQ8TE12 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
LMX1AQ8TE12 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
LMX1AQ8TE12 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
LMX1AQ8TE12 AL355312.1-201ENST00000407115 2176 ntBASIC16.75■□□□□ 0.27
LMX1AQ8TE12 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LMX1AQ8TE12 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LMX1AQ8TE12 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC16.75■□□□□ 0.27
LMX1AQ8TE12 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC16.75■□□□□ 0.27
LMX1AQ8TE12 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC16.75■□□□□ 0.27
LMX1AQ8TE12 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
LMX1AQ8TE12 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
LMX1AQ8TE12 AC135050.7-201ENST00000624508 2218 ntBASIC16.74■□□□□ 0.27
LMX1AQ8TE12 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LMX1AQ8TE12 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC16.74■□□□□ 0.27
LMX1AQ8TE12 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LMX1AQ8TE12 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LMX1AQ8TE12 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms