Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
ZNF549Q6P9A3 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
ZNF549Q6P9A3 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC17.16■□□□□ 0.34
ZNF549Q6P9A3 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
ZNF549Q6P9A3 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC17.16■□□□□ 0.34
ZNF549Q6P9A3 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
ZNF549Q6P9A3 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC17.16■□□□□ 0.34
ZNF549Q6P9A3 NUS1P2-201ENST00000417358 873 ntBASIC17.16■□□□□ 0.34
ZNF549Q6P9A3 UPK3BP1-201ENST00000428678 509 ntBASIC17.16■□□□□ 0.34
ZNF549Q6P9A3 THAP5-204ENST00000438865 868 ntTSL 2 BASIC17.16■□□□□ 0.34
ZNF549Q6P9A3 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
ZNF549Q6P9A3 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC17.16■□□□□ 0.34
ZNF549Q6P9A3 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC17.16■□□□□ 0.34
ZNF549Q6P9A3 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
ZNF549Q6P9A3 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
ZNF549Q6P9A3 GZMM-202ENST00000592501 941 ntTSL 3 BASIC17.16■□□□□ 0.34
ZNF549Q6P9A3 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
ZNF549Q6P9A3 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
ZNF549Q6P9A3 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
ZNF549Q6P9A3 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC17.16■□□□□ 0.34
ZNF549Q6P9A3 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
ZNF549Q6P9A3 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
ZNF549Q6P9A3 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
ZNF549Q6P9A3 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
ZNF549Q6P9A3 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
ZNF549Q6P9A3 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
ZNF549Q6P9A3 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC17.15■□□□□ 0.34
ZNF549Q6P9A3 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
ZNF549Q6P9A3 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC17.15■□□□□ 0.34
ZNF549Q6P9A3 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
ZNF549Q6P9A3 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
ZNF549Q6P9A3 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC17.15■□□□□ 0.34
ZNF549Q6P9A3 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
ZNF549Q6P9A3 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
ZNF549Q6P9A3 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
ZNF549Q6P9A3 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
ZNF549Q6P9A3 MED16-201ENST00000269814 1199 ntTSL 5 BASIC17.15■□□□□ 0.34
ZNF549Q6P9A3 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
ZNF549Q6P9A3 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC17.15■□□□□ 0.34
ZNF549Q6P9A3 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
ZNF549Q6P9A3 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
ZNF549Q6P9A3 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
ZNF549Q6P9A3 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
ZNF549Q6P9A3 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC17.15■□□□□ 0.34
ZNF549Q6P9A3 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
ZNF549Q6P9A3 AC138894.3-201ENST00000603787 634 ntBASIC17.15■□□□□ 0.34
ZNF549Q6P9A3 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
ZNF549Q6P9A3 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
ZNF549Q6P9A3 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
ZNF549Q6P9A3 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC17.15■□□□□ 0.34
ZNF549Q6P9A3 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
ZNF549Q6P9A3 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
ZNF549Q6P9A3 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
ZNF549Q6P9A3 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC17.15■□□□□ 0.34
ZNF549Q6P9A3 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
ZNF549Q6P9A3 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC17.15■□□□□ 0.34
ZNF549Q6P9A3 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
ZNF549Q6P9A3 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
ZNF549Q6P9A3 EGFEM1P-202ENST00000431685 1563 ntBASIC17.15■□□□□ 0.34
ZNF549Q6P9A3 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC17.15■□□□□ 0.34
ZNF549Q6P9A3 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
ZNF549Q6P9A3 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
ZNF549Q6P9A3 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.34
ZNF549Q6P9A3 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.34
ZNF549Q6P9A3 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ZNF549Q6P9A3 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC17.14■□□□□ 0.33
ZNF549Q6P9A3 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC17.14■□□□□ 0.33
ZNF549Q6P9A3 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ZNF549Q6P9A3 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
ZNF549Q6P9A3 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
ZNF549Q6P9A3 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ZNF549Q6P9A3 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
ZNF549Q6P9A3 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
ZNF549Q6P9A3 SPDYE21P-201ENST00000413323 827 ntBASIC17.14■□□□□ 0.33
ZNF549Q6P9A3 ABCD1P5-201ENST00000445663 754 ntBASIC17.14■□□□□ 0.33
ZNF549Q6P9A3 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC17.14■□□□□ 0.33
ZNF549Q6P9A3 RBSN-204ENST00000449050 903 ntTSL 2 BASIC17.14■□□□□ 0.33
ZNF549Q6P9A3 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC17.14■□□□□ 0.33
ZNF549Q6P9A3 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
ZNF549Q6P9A3 COX5A-204ENST00000567270 579 ntTSL 3 BASIC17.14■□□□□ 0.33
ZNF549Q6P9A3 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC17.14■□□□□ 0.33
ZNF549Q6P9A3 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ZNF549Q6P9A3 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
ZNF549Q6P9A3 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
ZNF549Q6P9A3 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
ZNF549Q6P9A3 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
ZNF549Q6P9A3 AC005915.1-201ENST00000624912 2018 ntBASIC17.14■□□□□ 0.33
ZNF549Q6P9A3 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ZNF549Q6P9A3 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
ZNF549Q6P9A3 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
ZNF549Q6P9A3 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC17.14■□□□□ 0.33
ZNF549Q6P9A3 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
ZNF549Q6P9A3 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC17.13■□□□□ 0.33
ZNF549Q6P9A3 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
ZNF549Q6P9A3 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC17.13■□□□□ 0.33
ZNF549Q6P9A3 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC17.13■□□□□ 0.33
ZNF549Q6P9A3 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ZNF549Q6P9A3 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ZNF549Q6P9A3 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
ZNF549Q6P9A3 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 55.9 ms